Array 1 28855-29336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOU01000008.1 Porphyromonas crevioricanis JCM 15906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================== ================== 28855 37 97.3 26 A.................................... GTAACGCCCAAAGGCTTGCTCGCTCA 28918 37 100.0 26 ..................................... AGTGGGATGTATGCTCTTGAGATAAT 28981 37 100.0 27 ..................................... ATCGTTGACGACATCGGCACGGAAAAC 29045 37 100.0 26 ..................................... AGTGGGATGTATGCTCTTGAGATTAT 29108 37 100.0 27 ..................................... TGGCAAAGCGGACATTGTGAAGCTGTT 29172 37 100.0 26 ..................................... GGTGTGCGCTATTTGGATGATATAGA 29235 37 100.0 27 ..................................... GGTTCGCATGTGTGGGTGTGGCTTAAC 29299 37 89.2 0 ...........................C.A...CA.. | C [29300] ========== ====== ====== ====== ===================================== =========================== ================== 8 37 98.3 27 GGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Left flank : GTTGTTTCATGCAGAAGAAATCTGTGAAGAAGTACCCTCAATTCCTTGTTTAATATGCTTATTATCAGTTATGACATTAGCAATGACAAACTCAGAAGTCGTTTCTCAAAGATGTTGGTGAAGAATGGAGCCATTCGTTTGCAATATTCTGTGTACGAGGTTAATAATACCAACAGAATGCTTGAGAACTTAACTATAAAAATCGACGAGCAATTCGCGAGAAAATTTGAGGGAGGTGATAGTGTGATTATTTTTGACGTCTCTTCCGTAAAGTTGAAGAAATATGGCAATGCAATCCATCGAGATGCGGATGTCGTTTTTCTCTGAATACAGACCTGGGTCTGTATGTTTTATGTCAATTTGCTGTAATTCTCTGTTTATGAGAACTATAGGGGAGCTTTTCTAGCTTTTTTCTTAGGGAGAGGGGAGAAAGAGATCTTTGATATTATTCCATAAATAATTGGTGGATACCAAATTATATGCTACTTTCGTCAGGGCAG # Right flank : GCAATGGAAAGCTGAAAAGAAGTGCATTTTGGAAAGTTCTTAATACACCTATTTCTTTCGAAATCATAAAAAGAGGCTGTGTCAAAATTCAATTTTGACACAGCCTC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 69096-68550 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOU01000044.1 Porphyromonas crevioricanis JCM 15906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 69095 37 94.6 36 .....G............A.................. AAATGTCCTTTACGATGCCTCAGCATGGTGTTAAGT A [69086] 69021 37 100.0 21 ..................................... GCTACCGTGGAGGCTTGGGGC Deletion [68964] 68963 37 100.0 35 ..................................... AAATGGAAACAAAACAAGAAAAAAAAATTAGTTCC 68891 37 97.3 38 ...C................................. TATGAGGCAAAGAAAGACAGCCCCGCAACATCGTTTGA 68816 37 100.0 37 ..................................... TAGACACTGTAGTTGTTCTCTAATAAACACTACAAGA 68742 37 100.0 39 ..................................... TAATATGAGTACAGATCCCCATGGTCCAAGAGCAAATCA 68666 37 100.0 43 ..................................... ATGAAAAAGAAGGAGGACAACACTCCCTTCTTCCACCTTATCC 68586 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 99.0 36 GTCTTAATAGCCTTACGGGCTGTGTATGTATAGTGAG # Left flank : CCAGTACCAGCAGATCCCCGGAGGTGGCGCAATTGAGGTCTCAATAGCCCTACAGACTATGTATATGACGATCACAAAGGTAAAATAAAAAACTAACCAAACAAA # Right flank : TACTTGAGCGACTGCAAGTTACGAATAATCCCAAACATAACGCATTGGCAGAGAACGACTCTATTTTCTTCGAAAATGCAAGTTGAGAAATGCAGCTATAACACTATTTTTGCAGTTGATCTGATTATATCTTATTGATATACAATCAGATTATCTGACTTTCTGTTTTCGAAAATAAGTAAGCAGGAGTCTTCGTTTTTTAGATTTTCGAAAAGAGTGAAAGTCAGCATTTGATAATCAAACACTTACAAATAGCGAAAAGTCTCTGTTTTTCGAAAATAAAAGCCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTTTTGCAACCAGCTGATAATCAGTACGTCAAAGAGCGATGTGTGGTTCGAGTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTCCTCCGGCTCCTGGGGAGAGTCGGATGTCCACTCATCCAAGCTGCGGTATAACAATGCTGACAGAGAGGAAGAAAAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGGCTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 3843-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOU01000035.1 Porphyromonas crevioricanis JCM 15906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3842 30 100.0 36 .............................. GTGGGCGCGAAGAATGCCGGGTCACAGACTGGGAAC 3776 30 100.0 37 .............................. CTATAAGCAGTGTTTAAGAATAGTCCATGCGCAGAAT 3709 30 100.0 38 .............................. CGCTTCATATCCTCTGCGCACAGCACATAATAGCAGCC 3641 30 100.0 37 .............................. ACTCAATCATCTATTCTTATTCAAGTATATATATGTA 3574 30 100.0 36 .............................. AGCCACCAGCGCAGGCGTACTACAACACCCACGACG 3508 30 100.0 35 .............................. ATAATAACCTTCATAATTAAGTAATTACTATCGCA 3443 30 100.0 37 .............................. ATTTTACAACTTCGTTCCCTTCCGTGCGAGCTTACTT 3376 30 100.0 36 .............................. TATTAAATATGGCAGCCAGCTGAGCAGCAGGTTCAG 3310 30 100.0 38 .............................. TCCCAGAAGGTGAAGAAACCATTGTCCAAGTTTCAGGA 3242 30 100.0 35 .............................. GCTCAAAGCAACAAGAATTAAGCGCACCGCTTGCG 3177 30 100.0 35 .............................. ATGCGTATCGATGTCGGCGATGCCTGGCAGATCAT 3112 30 100.0 37 .............................. ATCCTCGACACCTACATCAAAAGCATACTCTGATGGC 3045 30 100.0 37 .............................. AATTGACGTCTAGTTTTCTAACGATGGATAAAGATAC 2978 30 100.0 36 .............................. TTATTTGTCACGTTGACTTACGATGATGTGACGTTG 2912 30 100.0 36 .............................. GCCATTGGGGGGGTAGTAGGTCTCCCAAAAGGCGTG 2846 30 100.0 37 .............................. TCGACGAACAGCCTTGTACCTTGCCACTTCGTGACCG 2779 30 100.0 37 .............................. GCTGTAGCTGGTTTCTTTGTGTTTTTAGGATCTTTTT 2712 30 100.0 38 .............................. AAATTCAAAGCTTATGATTGTCCGGAATTTTTAGGCGG 2644 30 100.0 34 .............................. AGTGGAGTATGTCGATAGCCACGCCGGCTGTCAC 2580 30 100.0 37 .............................. AGACCGAAACTCGGCTGAACAGGAGAGGGGGTAGAAG 2513 30 100.0 36 .............................. AGGCAAAGACTGAGAGTAAACAGGTTCGACTGTTAA 2447 30 100.0 36 .............................. ACTGCAATCGTCTCGCAGAACTCTGTCCATGTCTTT 2381 30 100.0 34 .............................. ATTTATCTTCGATAACAGGTATTGCAGGAGATGA 2317 30 100.0 36 .............................. ATTATCAAACAGATACAAAACTGGGTTAAGCACTTG 2251 30 100.0 35 .............................. GAATCCATTCTTGCGAATGGATCCGACAAGCCGAT 2186 30 100.0 35 .............................. TGATTATGCACCTTGACGGCTCGCACAATACACTT 2121 30 100.0 37 .............................. TTCTCTCCCTTGAGGTCCTGCCCGATCCCATCGACGA 2054 30 100.0 36 .............................. TAGACCACGCCCCCTTCTGCAAATGGCTTAGGCACA 1988 30 100.0 36 .............................. GCCATCGTCTGCAAATCTTTGTTTACTTGCTTGACC 1922 30 100.0 37 .............................. TTAGCCATTCTTCCCTGTTTTTGAATGTTAATCTTTT 1855 30 100.0 36 .............................. GAGAAATTGACTGTCCGAGGCCGAAATTCGGTTGAA 1789 30 100.0 36 .............................. ACCAAAGGTTCCGATTCTCCATTCAACGGATCCGCA 1723 30 100.0 38 .............................. CCAGCGTGTGTTCCCTGTTCATCTGAGAGGATATCACG 1655 30 100.0 37 .............................. GTCGCTATTACTTTTGCTTTCATATTGCTATTTCAAT 1588 30 100.0 35 .............................. GTCTAACAAGGGCAAAGATGGAATATAAAGAGAGC 1523 30 100.0 36 .............................. TCCCTCACTGTTTACATATATATACTTGAATAAGAA 1457 30 100.0 37 .............................. TTCATAACGTTGCTTGGTGCAATCGGAATCGGGCTAA 1390 30 100.0 37 .............................. CTGGTTTACCCCGTTCAATCCCCAGTTCGTGCGACCT 1323 30 100.0 37 .............................. TCGCCCACAAGACCGGATAAAGAGCGAAACGAAGACC 1256 30 100.0 37 .............................. TCGATATCGAAATTTTCGGTTAGAAATTTGGATGAAA 1189 30 100.0 35 .............................. GAGGCATAGGCTAAAGTGCTTATCTATTAGATAGC 1124 30 100.0 36 .............................. TTGCCGCTATTGCCCCACACAAACCACACACCCGAG 1058 30 100.0 35 .............................. TCCTAAATTGGGTGATATATTCCTTGGGTGTCATA 993 30 100.0 37 .............................. GATTAAAAGGCTTGCAGCAAATCTCATCATCAGCTGG 926 30 100.0 37 .............................. CTTATACAAATGTAAGAAAATGGAAAGAGGCTCCCCT 859 30 100.0 36 .............................. TGAGCAGAATCCGTTACAAAAAGATAGTCAAACCAA 793 30 100.0 36 .............................. GAAACTACATATTTCAAAGAAACACCCGAAAAACCA 727 30 100.0 37 .............................. ATGTTTTGAAGTTGTTTCGTTTTTATCGGACTGTTGA 660 30 100.0 37 .............................. TTGTCTGAACTCTCCGGTATCAAAAATCCCTATGAAA 593 30 100.0 36 .............................. CAGGTTGAGAAGAGTCAACTCTATTCTCAGCGACTG 527 30 100.0 37 .............................. TCCGGAAGGCCTTGTACTGCGTCTTACTGTCCTCATT 460 30 100.0 37 .............................. TCGAGATCGGCGTGTTCTGGACGGACTTTGCTATCCC 393 30 100.0 36 .............................. GCGTTACTGTTGCCGTATCGCTTGTTGATCAGCGAA 327 30 100.0 37 .............................. TCGCTCATTATCTCATCAACAAGATCTGAGTACTCCA 260 30 100.0 38 .............................. GCAAAAGGGTTGTACCACCCCAAACGGTCTGCTCCCCA 192 30 100.0 36 .............................. GACAAATTTCAGAGGCGAGCAAAGTCGAACAACGTT 126 30 100.0 36 .............................. TCTGAGGAAAATAGAACTTCTGAGGAGAATTTATTA 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 58 30 100.0 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : AAAATGTATTGGTAATGTATATCATACTCGTATATGACATAGGAGAAAAGCGAGTTGGCAAAATGCTAAAGTTGTGTCGCAAATACCTAAACTGGATTCAGAACTCTGTTTTTGAAGGTGAGATATCCAAAGTCAAACTTCTCGAGCTGAAAGGATTAGCCCAAAAGCTAATGGACAAAAGAGAGGATAGTCTCATTATCTTTGCATCAAGACAAGAACGTTGGTTAGAAAAAGAAATAATCGGTAAGGAACGATGCTCCACTGATGTTTTTCTCTGATTAAACTCGGTTGGCTTGTCGAAGTAAGGGAAAGAAAAAAACAGTTCTACAAAAGAACCTTAGGCGATCTTTGAAATATTTGATTGTTAAGCAGATAACTAAGTCGTCATAGTCTCGGTAGTACTCTACAAATGCACTTCGACAACTTTAAGACACAAAAAACGAATTCTTCTGTAGCAAGAACCCTTTGTTAATAAGGGAAATAACTGGTATTTTTGACGG # Right flank : CTAATTAAATAGGACAGGCTCTTCGACAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //