Array 1 317285-318510 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTL01000001.1 Ligilactobacillus salivarius strain NT33_2 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 317285 36 88.9 39 AGA..........T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA A [317288] 317361 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 317436 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 317508 36 100.0 38 .................................... TTTAGAACGTGATTTAAAAGATAACTTTACAATTTCAC 317582 36 100.0 38 .................................... GGAAATGAATTTGAACGGAGAATTGGTAAACTTTTTCA 317656 36 100.0 38 .................................... AACAGTGAATTTTTCACTCTCTCTCGAATTATTTTCTC 317730 36 100.0 44 .................................... TTCATTGATATGTTGGTTAAAAATAATGATGGAACGTTTGATAT 317810 36 100.0 34 .................................... ACAAAAGACTAATCATAGTTACCTAGTAAGGGCA 317880 36 100.0 42 .................................... ATGCAAGAAATCCTGGATGACATCAAAAATCTATGGGTTTAG 317958 36 100.0 38 .................................... TGAAAAAATATTCGCATTAGCGGAAAAACTGAATTTAA 318032 36 100.0 39 .................................... GACGTTTGAAGAAAAACATCCGAACGAAATGTTCGATGC 318107 36 100.0 38 .................................... TACACTAGCAACGTTAATAAGTTACTTAAATGGATACG 318181 36 100.0 40 .................................... AGAAAAGCTAGATTTTGAATTAGACGAAGATAAGCTAATC 318257 36 100.0 38 .................................... TGTAGCGCATTGTTAGCAGGATGTGGGGCAAATACAAG 318331 36 100.0 36 .................................... AGAAAACAAAGAAAACTGATTTTATATGCAACGAAT 318403 36 100.0 36 .................................... TTAAGAGCGATGATAACGGCAATGTGGGAGTTGAGA 318475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 17 36 99.3 38 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : TATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 46158-48623 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTL01000011.1 Ligilactobacillus salivarius strain NT33_2 scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 46158 36 100.0 30 .................................... AATCGTCTCTAGCTTATCCAGGTCACTGTC 46224 36 100.0 30 .................................... TGATTACCTTATAGAGTCCACGTTGATCCT 46290 36 100.0 30 .................................... TCATTTCCAGGAATATCGACATCTGCTAGT 46356 36 100.0 30 .................................... AAACTGGCGAGATACAAGATTGATTAGTGA 46422 36 100.0 30 .................................... AGCTGGTTTAAGCTATAAGATCTTGGATAA 46488 36 100.0 30 .................................... TGTCTATTTTCTTACCATTTAGATGCTCTA 46554 36 100.0 30 .................................... CTACTGTATCAGCTTGTCCCACACCTGGAG 46620 36 100.0 30 .................................... GCAGGTATTATCTTTACTTGTGTTCAACCA 46686 36 100.0 30 .................................... AAATCAAGGTTGCGTTTGGTGTAAATTAAA 46752 36 100.0 30 .................................... AAGAACATGGCGAACTTTCAGCAGGAATTA 46818 36 100.0 30 .................................... TATTCATGGATGAGTTCGCATACCGTGATT 46884 36 100.0 30 .................................... TTTATATACGTATATTATACCATAAAAGAT 46950 36 100.0 30 .................................... TCTGCATTGCTTCAATCGCTGTAATATCTC 47016 36 100.0 30 .................................... AAGGAAGTTGAGAAAAACGAAGAGCTGCAG 47082 36 100.0 30 .................................... ACCATGCTTGTAGAAAGGTGCGGCGTTTGT 47148 36 100.0 30 .................................... ATGGTATCTTTTTGTTGGCCTCTGTAGCAT 47214 36 100.0 30 .................................... GATGACAATACGTTTCTTGATCCAGAATAT 47280 36 100.0 30 .................................... TTACCGGCTTCAAAAATCTTGGTGATTGGC 47346 36 97.2 30 ....T............................... ATTTAACACCAACAGTTAAGATTAAGGAGG 47412 36 100.0 30 .................................... AAGCTTCAAAATATATACTTTTTTAGCGTT 47478 36 100.0 30 .................................... AATGGATCATGCTATTTGCCAACATCAATC 47544 36 100.0 30 .................................... CCTTATGCAGAGAACATCATACAGAGCAGC 47610 36 100.0 30 .................................... ATCATATGGTGTTGAGTATGAAGCAAACAA 47676 36 100.0 30 .................................... CCATGTTCATCAAGCATTAAAACACCAATA 47742 36 97.2 30 .................................C.. CAGTTGAAACACGTTTTACTCTTACAAAGA 47808 36 100.0 30 .................................... TTGCTATTTGAGTAGTGAAGAATACATTTG 47874 36 100.0 30 .................................... TGTTTCTAGTATAATTATACTCAGAACTGT 47940 36 100.0 30 .................................... CTACAAATGCAAAACAGGGTGCTTGCAGCT 48006 36 100.0 30 .................................... AGGGATTTACATTCGAAATTAGTGATGCGG 48072 36 100.0 30 .................................... CAAAAGGGTTCGTAATAAGACTATTGCCTA 48138 36 100.0 30 .................................... AAGATTTTCTATCATTTACAAACGTCTTCC 48204 36 100.0 30 .................................... ATGACAGTTATAAACAATTTAATTTACCAT 48270 36 100.0 30 .................................... TTTTAACCCTAGGCGGTATCTTAAGCATAA 48336 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 48402 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 48522 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 48588 36 80.6 0 ......T...A.........T...AG....G..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 37 36 99.0 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCAAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : CTAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //