Array 1 2997418-2997089 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVV01000001.1 Citrobacter koseri strain NCTC10769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2997417 28 100.0 32 ............................ GGTAGGCACACCACCAGACTGGGAAACAGTGC 2997357 28 100.0 32 ............................ TTACCGGGATTCAGTCGGCATGGATTAAATCA 2997297 28 100.0 32 ............................ GCAAGCAGATAAACGGTATTATCGTTGGCGGC 2997237 28 100.0 33 ............................ CTTCTCCGGCAGCACGTCTCCCGCCTGTACATT 2997176 28 96.4 32 ..............G............. CGTTGCAGCCTGCTGCGCTTTCCACTGCTCAA 2997116 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCGCTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTTGGTGAAAAAGGGTCTGACAGGAAGATGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAATGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGGCAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3009665-3008676 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVV01000001.1 Citrobacter koseri strain NCTC10769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3009664 28 100.0 32 ............................ TCTGAGCGCATGGAGCAGCAAGACGAGCAATT 3009604 28 100.0 32 ............................ CGCAGCGGCGCGACCTCTCCGCAACCCACAGA 3009544 28 100.0 32 ............................ AGGATGCGAAAGACGGTATTGCCACACTGTGG 3009484 28 100.0 32 ............................ GTGCGAAACAGGGCTGGGCTGAATATCAGGAT 3009424 28 100.0 32 ............................ TATAACAGGGTCTACATATCCCTTTGTCCGTA 3009364 28 100.0 32 ............................ AGAGAAGTGTCGAGTTCGATGCTGACGCCGAT 3009304 28 100.0 32 ............................ GAGATGGCCGGGGGAATCGGACACCAGTTTAA 3009244 28 100.0 32 ............................ AGCGACAAGCCGACAGAAGATGATATTTGGGC 3009184 28 100.0 34 ............................ CATCGAGTGTGGTCTGGCTGGTGTTCTCTTTGGG 3009122 28 92.9 31 .......................GA... GTTCGCTGACGCCGACGCGGCTCGCGGGCAT 3009063 28 100.0 32 ............................ AGATAAAATGCCCCGGCCACAGGAACCGGATC 3009003 28 100.0 32 ............................ TGGCGTAACAAGCAACGAACCGGCCTCCGCTA 3008943 28 100.0 32 ............................ TTGCTGTGAAAGTACGGTGCGTTTCGAGGTAA 3008883 28 100.0 32 ............................ GTATCGCCGACTGCGTCCCGATGCGGGAGAAA 3008823 28 100.0 32 ............................ GCAACTCAGGATGATCCTTGTTCCGGGTTCAC 3008763 28 100.0 32 ............................ TGATGCGAGAGCGTGACAAGCGCACTCACAAG 3008703 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCAGAGAAAGGTTATGACCGTGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACAGATTCA # Right flank : CCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATAACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAATGTCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCAATGCGGGAGTTCGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //