Array 1 29809-31729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKX010000011.1 Parasutterella secunda strain An562 An562_contig-110_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29809 28 100.0 33 ............................ CGTATTGAAGCCCGGCGAGGACATTACTTTTAG 29870 28 100.0 33 ............................ CAAACAAAAAATTATTCTTTTGAACTACATGGA 29931 28 100.0 33 ............................ CCCGGTACGGAGTAAACGGGCATAGGACGAACA 29992 28 100.0 33 ............................ TACTTAGCCAGACGATCAATGGTCCGACATTCC 30053 28 100.0 33 ............................ TTTCACCTTTTATTCATAACGGAAAATAACTTG 30114 28 100.0 33 ............................ TCAGGATTTGAATTAATAGGTAATCCAAAATAA 30175 28 100.0 33 ............................ TATCCTCGCGCGGGCTTCCGCTTTGCGCCTTGA 30236 28 100.0 33 ............................ TAGCCGCCGGGACAAACATTTCATTGCCATTTA 30297 28 100.0 33 ............................ TGACGCACGTTGACTGGCACCCGTACCCCGAAG 30358 28 100.0 33 ............................ TGGAGTTAAAAAATGAAGGCATATTCTATTTTC 30419 28 100.0 33 ............................ CATGATCGATTCGATTGCCGGATCTGAAATTGC 30480 28 100.0 33 ............................ CGAAAAAGCCCGTCGCTTCTTGCTTCGGGCTTC 30541 28 100.0 33 ............................ CGAGATCCCCGGCAAAATGAACGATGAACGCCG 30602 28 100.0 33 ............................ TGAGCAATCTCCCACAAATATTTCATTTAAAAA 30663 28 100.0 33 ............................ TGATGAGGGCATTTATCCCAGAAGGCCCAAAGT 30724 28 100.0 33 ............................ CCAATTTCACCGTTCCATCGGCTTCCCGTTGTC 30785 28 100.0 33 ............................ TCATCGGATTCGGTGATTCGGATGTACTCTTTG 30846 28 100.0 33 ............................ CACAGAACTGGTCTTATCAAAAAAGGAAGCTAG 30907 28 100.0 33 ............................ TAACTGGGTATACTTGTTGCTATTCTGATAGAA 30968 28 100.0 34 ............................ CTAGACCACTTTTGAGACATGGAGGTGTGTTCCA 31030 28 100.0 33 ............................ CCCGCTTCAACAGACCGAATCGTGGTTTGCAGA 31091 28 100.0 33 ............................ TTCTTTCTCTCGGCGATTGACGAGCCCTTGATT 31152 28 100.0 33 ............................ CGACGCTTCGAGGTAGTTACCAACACTGCCGGT 31213 28 100.0 33 ............................ CGGCATTAAAGCAAACCCTGCCACCCATTCAAG 31274 28 100.0 33 ............................ CATACCCATCGGGGATTTCACGGTATCGTGGCC 31335 28 100.0 33 ............................ CATCGGCAGCTTCCCAAACTCGACGAAGTCCTC 31396 28 100.0 34 ............................ CGTTTAGCCCAGTTAATGTTGCTCATTTTCTGTA 31458 28 100.0 33 ............................ TTCATAAGTTTTTCAGTCTGTCATCATCGGGAA 31519 28 100.0 33 ............................ CTGGAATGCGCAAGACATTCAAGACGAAATTAC 31580 28 92.9 33 ...........G..T............. CATGCTCTCGAGTGACGATATCTGCCAGTTCTG 31641 28 92.9 33 ...........G..T............. TTGAATTACCCTTCTAAGACCTTCGCCATTGCT 31702 28 92.9 0 A..................G........ | ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.3 33 GTTTTCTCCACATACGTGGAGGTGTTTC # Left flank : ATTCGCTTGATTTAGCATTTTGTATAACAAAAGAAATGGCTGGAGTTTATCTTGCCGAGAAACTGAGAACTGCTTTCGTCAAAAGAGTTGTAGAGGGAAGGCTGCTTGAGCAAATCCCTAAAGATATTTCTTGCATACTAGGCCTGAAAAATGATAATCCTAATAACGAATGACCTTCACCCTGCTGTGCGAGGAAGAATAAAGCTTTGGTTTGTAGAATTAAAACCTGGAGTTTTTGTTACGGGAGTCAGCGGTTATCTCTCAAAAAAAATAACTCAATTTTTGTTAAAACAAAAATTCGGTGCAGGAAGTTTGTTAATCGAATCAACGACTAATTCTCCTGGATATAGAATCCACACTTTTGGTCTGCCCGATAAGCAAGTGATCAGAATATCTGACCTTCAGCTTATTGTTTCCGGTAAAAGACCTGGGTTAATAAAAAGTTAAATTTTTATAACAATACTTTGATTATTTCTTAAGTCTTTATACAAAATATTGCT # Right flank : CCGACTTCTCAGTGTTTGGCTGTGCTTGGTTGGGATTTTCTCCATTTAAGCAACCAATATCGGCGGAGTTTTCTGTTGTATGAAAAGCCCCTGTGATCGTTGCAACTCTTGATGATGTCAAACCTGCTACTGAAAAACCACCTCGGATGTTTGGTCTAAAAACACGCGAGCCCCGATAGTTGGGACTACCAAGGCTCTTTACTTACGCGTTCAGCATGCAAGAAGCAAGATCAACGCCATGATGATTTTGATCACCCAACGTCTCAAGCGTTTTGCTATGGTTTTGTCCCCCGAGATTGGGAGGAAACCACAACAAAACCTCCCAATACTTAGCGAGTAATCATGCAAATCTCGCTGGACGTGGGAGGTATTTTACCTAAATAAGGCCATTGTCCAAACATGACTGGATTTTCTCTACATACGTGGAGGTATTTCTGAATACGACAAACCGGCTGCACACAATAAAAATGTGTTTTGCATACGTTTCAGTATGAACTACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACATACGTGGAGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 224-553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKX010000015.1 Parasutterella secunda strain An562 An562_contig-110_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 224 28 100.0 32 ............................ ATTCCAATGATAATAATTCAGCCATTTTAAAA 284 28 100.0 32 ............................ ACTAAGAGATAAACTATAAGATAACTATAAGG 344 28 100.0 32 ............................ TCGCATTTGCAGCTCGCAGATCTTTTTGCATG 404 28 100.0 33 ............................ AACAAAAGAGTGCGTTAATGATCTTACTTGCCC 465 28 92.9 32 ....................CC...... AGTACAGTAGAAACGTCTGATTGCTTTTCTTC 525 28 92.9 0 ............A.......C....... | G [551] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TAAACAAGCACAAGATAAAATTAATCACCGTCCGAAACGGGTTCTGGGATACAATGCTCCGGACGATGTTTTCAACCGAGCGTTGAAACGATATCGAAGAAGATATCAATAGTCTCTGTCGGAATTAAAGTGATAGTCTAGATCCGATGGGAAAATTGCACTTCGTACTTGATACCGGGATTATTGTCTTTGATTTATCTGATTTTTGAAATAATTTTCTACAG # Right flank : AAGAGGTAATTGCAGGGGAGTGCAACGAATACGAAAAACCCGATCTGAAATGAATCAGTTCGGGTTTGAAATTTGGTGCGGCCGATGAGAGTCGAACTCATATGGATTGCTCCGCCACCCCCTCAAGATGGTGCGTCTACCAATTTCGCCACGGCCGCGAATCTCTACTCTTTTTCGGAGAAAGTCTCCAAATCAGAGTTCATTATTTTAGCGCGGAATCTGTTGAGATTGCGAGGCCGGAGCGGCAGGTTGTGTCGTATTTGTTTGATCTGCGTCAATAGATTGTGATTGTTCGACGGAACCTAATACACCGGAGGTGGGTGCAGGGGCCGATTTGAAGGCGCCGGAACCCAACGTCAACGCGATGGTAGCCAGGAAAAAGAACGTGGCAGCCACAGCAGTTGAACGAGATAAGAAGTTAGCGGAACCCGACGCACCGAAAATAGAACCGCTGGCGCCGCTACCGAAAGCAGCACCGAGGTCGGCACCTTTACCGTGTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //