Array 1 3049475-3047067 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019403.1 Salmonella enterica subsp. enterica serovar Apapa str. SA20060561 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3049474 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGCGAAG 3049413 29 100.0 32 ............................. CGGTGCTAAATGTGAGGATCTCTTTTCTACTG 3049352 29 100.0 32 ............................. GCTCCGGTGGTGGGGCGAATAGCCTGGACTGG 3049291 29 100.0 32 ............................. AATAACCTGTTACTGGAAAATTCCAGCGGTAT 3049230 29 100.0 32 ............................. AGTTTAATTATTTTTACGAACGCCTTAAGGAC 3049169 29 100.0 32 ............................. GTTACGTTATTATCTCTCACATAGACCCGGCA 3049108 29 100.0 32 ............................. ACGCTGGGTACGAGATATCACCCACGCTCCGC 3049047 29 100.0 32 ............................. TTTACAGGACCGCTATTATTAACCTGTGTCGG 3048986 29 100.0 32 ............................. CCGTGCTCATTACAGCACCCAACGTTACGCGA 3048925 29 100.0 32 ............................. GAATGGGTGAAATGCGGGATCGGCGTGTCGAC 3048864 29 100.0 32 ............................. TTTATTGATAGTAACTGATTGTTATTAACTCC 3048803 29 100.0 32 ............................. AATGATTGCGTCAAATACGACAACCTGCCAAA 3048742 29 96.6 32 ............................T AGCGGTGATTCACTAACGTTTACGCTTACTGA 3048681 29 100.0 32 ............................. GAGTTACGCCAGGTTGAATTATTCCGCTGGGC 3048620 29 100.0 32 ............................. GACATACAATGGTTAAGTATGAGTTTTCAGCA 3048559 29 100.0 32 ............................. CCGGCGTGTGTTGTTGAAGATCAGTCTAAAGA 3048498 29 100.0 32 ............................. ATCCATATCAGCGCACCGAAATAACGGACGGT 3048437 29 96.6 32 ......T...................... AGGCTGCCTTAATACGCGAATAACCGTCTAAC 3048376 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 3048315 29 100.0 32 ............................. ATTGACCCGCAGCGGTGCCCCGTCGATTTGAA 3048254 29 100.0 32 ............................. TTGGGGTTACCTGCTCTCCAGTCACGGCAGGT 3048193 29 96.6 32 ............................A CGTTGTTAACGGCAGCCTTATCTGCTTTACCA 3048132 29 100.0 32 ............................. CAATGTGCAATCCTATACAAGAGATATTCCAA 3048071 29 100.0 32 ............................. TCGGTGAGCATTGAAGCGCTTTACTTAAGGCA 3048010 29 100.0 32 ............................. GCAACTCATCACGATTACTTACAGGTTGGCTA 3047949 29 100.0 32 ............................. TTGAGCCATCGGGATCACAACGTACCGGAGGA 3047888 29 100.0 32 ............................. AAAAGCGGGAGCGAGCGCGGCAGCAGAAAGCG 3047827 29 100.0 32 ............................. TGGCGAAACAAATCACCAGAAGAATTATTATG 3047766 29 100.0 32 ............................. GAATTTCCAATAATCAGCGCCGTGTTGCTGAA 3047705 29 100.0 32 ............................. ACTGACCCCCCAGTGCTTTAACCTTCTCATGG 3047644 29 100.0 32 ............................. TGTGGGGAGAGTGCGAGCGCGGGGAGGCAGCT 3047583 29 100.0 32 ............................. CGCAACGGTCAGTTAGCGCACCCTTCATCCTT 3047522 29 100.0 32 ............................. ACCTTTATTAGAGATATCCAGGCATTTAAAAC 3047461 29 100.0 32 ............................. TTAAATCTCCATCAGGAGCCTGGACTATTTCA 3047400 29 100.0 32 ............................. GCTTACGAAGTTCATTACCTGTACTTGGCGCA 3047339 29 100.0 32 ............................. GTCGCAGGCCTCGGTGGTGGGGTGGATATTGA 3047278 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 3047217 29 100.0 32 ............................. TTTTCAATAAATTATCTTGCATCAATAGACAG 3047156 29 100.0 32 ............................. CATAAAACTGGTCGAGTTCGTGGTATTGATAT 3047095 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3068299-3066682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019403.1 Salmonella enterica subsp. enterica serovar Apapa str. SA20060561 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3068298 29 100.0 32 ............................. TAACGGATGCGGAAATTTATTGGGATAACATT 3068237 29 100.0 32 ............................. TTGTCGATGATGCGATTCTCCTGCCATGAAAT 3068176 29 100.0 32 ............................. ACGCTGGTTGCAATCGGTATAACCAGGTATCC 3068115 29 100.0 32 ............................. TGGAGGCAGGTTGAGGCAGCGGCCGCGCCAGT 3068054 29 100.0 32 ............................. CGATTATGAGTTTTAGGTAAAACAATGACTTA 3067993 29 100.0 32 ............................. TTGTTCCATTGCGTTTTACTGATCGCCATTAT 3067932 29 100.0 32 ............................. CCGAGCGCGTTGCGGCCCGCGTGTCAGCCATG 3067871 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 3067810 29 100.0 32 ............................. GAGCCGCCAGGGTGAAACAGATTTCGCACCGG 3067749 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 3067687 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 3067626 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCACACAGCATA 3067565 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 3067504 29 100.0 32 ............................. ACCGGGTTGGCCGCATTCATCGTGGACGGCTT 3067443 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 3067382 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 3067320 29 100.0 33 ............................. CTTTCCGGGCGCGAAGTTGATACCAGCCCCGGC 3067258 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 3067197 29 96.6 32 .............T............... ATCGCAGGCGCAGCGGCAATATTCTGGTTCAA 3067136 29 96.6 32 .............T............... TTAACTCTTTGCTGGCTCTTACATACGGCGGC 3067075 29 96.6 32 .............T............... CCATATAGCCCCCCTCTTATATGGCGTATGAA 3067014 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 3066953 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 3066892 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 3066831 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 3066770 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 3066709 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTAGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //