Array 1 161083-163529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSSP010000017.1 Streptomyces olivaceus strain CR27 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 161083 37 100.0 37 ..................................... GACGTCATCCCGAACGTGTCGTCGGCGGCGACAGCCA 161157 37 100.0 35 ..................................... GATGAGAACGGCGGCCTGTGGATCCGGCTGACGGT 161229 37 100.0 37 ..................................... GTGCGCGACCCGGAACGCAACCGCACCGTGGTACTGC 161303 37 100.0 35 ..................................... CTCGTCTTCGAGGGGCATCGTCATGCCTGCATCGA 161375 37 100.0 37 ..................................... ATCAAGGGCGGGGCGAATGGGAGAGAGCTGCCGGGCG 161449 37 100.0 37 ..................................... TACAACCTCGGCACCGGCGCCCACCCCTTCCACCCCG 161523 37 100.0 36 ..................................... TTTACGTCGCCGAGGAAGGCCGTCCACTGGTCGTGA 161596 37 100.0 35 ..................................... GCCGAACACCTCGGGATCAGCGAACGGACCATCAG 161668 37 100.0 38 ..................................... GTAGAGACTGCCTTCAGGTCCACGTTCAGTCCTTTCAC 161743 37 100.0 36 ..................................... AGCGTGCTGGGAATGCTCTACCTCAAGGCAGCGATG 161816 37 100.0 36 ..................................... TGGTAGGCGAGCTGCGCCTCCACCGCTTCCGTGGAC 161889 37 100.0 36 ..................................... TGGTAGGCGAGCTGCGCCTCCACCGCTTCCGTGGAC 161962 37 100.0 37 ..................................... CGCACGTCCTCAGCCGAGTTGAACTCCGGCTCCCCGA 162036 37 100.0 37 ..................................... GACTGCGGCGGCGGGGAGATCCACATCCCGATCCACG 162110 37 100.0 35 ..................................... GCGGTCTCGTCGGCGTCGCCGTTCGCGTCGCCCGG 162182 37 100.0 37 ..................................... TGCTCCTCGCGGTCCTGAGCCGCGCGGCGGTCCTGCT 162256 37 100.0 37 ..................................... CGCTCCGCTCCAATCCGAAACGGAATGAGGCCCGGCG 162330 37 100.0 35 ..................................... ACCACCGGCAACCAGTGCGTGTCCCGGCACGTCTT 162402 37 100.0 35 ..................................... GTCGAGGGGGAGGCCGGCGAGGGCGTCGATCAGAG 162474 37 100.0 36 ..................................... TCGGAGAGGACCGCGGCGAGAAACCGGACGCGGGAC 162547 37 100.0 35 ..................................... GCCTTGGCGGTGTGGTGGGTCCGGGTGAACAGGAC 162619 37 100.0 38 ..................................... CCGAAGTCCACCGAGGGCGCCGTGGCGATGATGCTCGC 162694 37 100.0 37 ..................................... TCCGGGTTCTGATGGGTGAGTCTGCCCCTCCGGCCCC 162768 37 100.0 35 ..................................... CTTGACGCCGCTCGTCACCGGCACCGTCCTGCCCT 162840 37 94.6 36 ......A....T......................... ACCAAGACGCAAGCCGCCATCGTCAGCGCCACGGAC 162913 37 91.9 35 ................T...T.G.............. GACCGGCCCGACCGCGACCCGCGCGGCCGGTACGT 162985 36 86.5 36 ........TA......C.......G..-......... ACCATCACCCCGTGCTGCCCCGTCCGCCCGACCGAC 163057 37 89.2 36 .....A....T...T.T.................... TACCCTGCGCTCAGCGCAATGGATGATGGTCCGCTC 163130 37 89.2 35 ......A.........C..A..G.............. GCACAGGACGTGTCCACGCTGACCGGCGCCCACTA 163202 37 94.6 36 ........T..........A................. CGCTTGTCGGACGGGCGGCCGATGACTATCCAGCCG 163275 37 94.6 36 ...............T........T............ TGCTCCGGTGTGCCGTTCCGGGCGGCGTGCCAGTGC 163348 37 86.5 36 .........AG.T.T.....T................ GAGTACGTCTACGAGCCTGGTGAGCCCTTGGGCTGA 163421 37 91.9 35 ...........TT..T..................... CACGCCTCGGACGAGGACAGCGTCATCCCGCTCGA 163493 37 86.5 0 .........A...............A...G.T....T | ========== ====== ====== ====== ===================================== ====================================== ================== 34 37 97.2 36 CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CCGGCTCACAGCCCCGAGTCGGCCTGTCTGCTGCCCAGGCGCGGTTTTGGACGACGGCAGCCGCCAGCGCCACCAGCAAGTAGGCAGTTGTCCGGGTGATGCGACCGACCCTGGGCCGCCCAGGGGAGCGGGTTCGGCCGGTCCGGCCGACGGGGCCTCCAGTGCGCCCTGCAACCGCTCGGCCAGGCCCGGACAGCCCGCTCAGGCCCCGGACCGGAAGGGCGCCGGACCAGCGGAGCGGGACGTTGCCTACCCTGGGGCGCCAGAGCGCAGGCCCTCCACCAGCCTCCCTATGGCGATCGCGTACTTTGACAACCATGATGTCCGCTACACGGCCGACACTTGGATGAGTGTTCCTTCCTCATGACTGCTTCGGAACCGGAAGCACACACGCGACACGCGAATTGCACCTAAGTCGTATGTCCGTTTTCAGCAACTCTGTTACTCGATGCTCACCCACAGAGGAGTGAGCGGTAGGCTGTTTTCACTGCTCAAGCAGC # Right flank : TGCACACCACGTCGGTGGCCAGGGTGTGGCGGCCTCCTAGCGGTTGTCCCCGAGGCGATCGTTGATCGGTGAGTTGGACCTGTTGTGCCATCGGGGCTTCGTCGCTCCTGCTGGCTTTGACCGGGATGCTGGAGGGGTGATGGCTGTCAGGTCAGCAGGGACGGGGCGGCCTCGCGGCTCGGTGTTCCTGGTGCGGGCCAGGGATTTGGGGTGCTGGTTTGGGTCTGTGAGCCGGCTGGTGTCCGAGGGGGCGGATACGGTCTTGGTCTCGGCGCGGAGGGCGCCGTGCGTCTGGTGGGGGGGGAGAAGGTGTAGTGGCGGGTGTGTTGTATGCGCACAGCCTGAGTGGTGTCTCGGGGGTGCGGCACACGCTGGAGGACCACTTGCGTGGCTCGGCGGTGCTGGCGCGGCGTTTCGGGGAGGTGTTCGGGGCCGGGGAGTTGGCGGAGTATCTGGCCTTGGTGCACGACGTGGGCAAGGGGGCGTGTGCGTGGCAGGAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 172514-172916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSSP010000017.1 Streptomyces olivaceus strain CR27 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 172514 37 100.0 37 ..................................... CCCTTCCCCCACAGTCCTGCCCCGACCCGCTGCCAGA 172588 37 100.0 35 ..................................... CACGTCTTGCCCTGCGCCTTGAGTCCGGTGGCGAT 172660 37 100.0 36 ..................................... GACCTGGCCGTCACCCACACCGACGTGACCGGCGTC 172733 37 100.0 36 ..................................... GTATTCACGGTGCGTCTCCCGCGAGGCCGAGGACGG 172806 37 97.3 37 ...................................G. ACGTCCGGGGTGACGCGCTCGATCGCGTCGTCCCAGC 172880 37 91.9 0 ...........T...........T......C...... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 98.2 36 GTGGCGGTCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : CCCCTGGACGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGATACCACCAGCCCAGCTGGCCAACGCCGCCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAGAAATCCGTTTTCGAGATCGTCGCCGATGAAAAGACACTCCTCACCCTCCTCCATGACCTCGACCAGATCATCGACTCCGACACCGACAGCATCCGGCTCTACCGGCTGCCCGCCGAAGGCTTCGACCACGTCCAGACTCTCGGCATCGCACAGGCCCAGCCCCATCGTGGAGACCTCGTACTCTGACGGACGATGACGCCCGCTAGACGACCAACGGGCGGATGCGTCTTCCTCCCGCCCGCCTGCTTCGGAACCGTAAGCACACACGCGACACGCGGATCGCACCAAAGTCAAATGTCCGCATTCAATAGTTCTGTCGCCTGTCGCTCCACTACTCGGGAGCGAGCGGTAGGCTGATTTTGCTGCTCAGGCAGCGT # Right flank : CATCGACATGGACAACTTACACGTGCCGGTGCGTGTTATTGAGATGGGGCAGGCGCTTAGAAGGCGCCTGCTCTATCCTCGCGTTCCCTTGGTCACCGAGGGGCAGGTATGGGTGGGTTCGGACAGATTCGCCGACAGCAGACACATTGAGTCCCATACGGACTGGATTAACTCGGCGAAGGAAGCAAACCTAGAGCGGTCTTGAGAAAGCAGAACCTGCTCTCTGCGCATCAGTCGGGACCGCGAGAGGTGCGTCGCGGGCGCAACATAGCCGACGATCGCCGGTTGGCCAAACCGGCGCTTCTGCAGACCATTGAGTGACCAGGGGATTCCGACGCATCCCGATGTCTCGTGTGAGGAGTCATGTAGCTTGTCGAAGCTGGCAATAGGTGAATCGTCCTTGCTCTCTGCGGACCATGTTCGCGCCCTTCTGGAGTGGCTCCAGGAGGAATCTTCGGGAGCCGTTTTCCCTTTCCTCGCCGCTATGGCGGGCACCGCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.80,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //