Array 1 338-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGR01000001.1 Mycoplasma gallisepticum strain K6372 Contig_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 337 36 100.0 30 .................................... CAATAAATCAAAAAATTCAAGAATTAAATG 271 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 205 36 100.0 30 .................................... ATTTTAAAGATAAATCTGCGCTTGAAGTTG 139 36 100.0 30 .................................... TATACAACTTAGTTTATGACGTTTATATAA 73 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : GTCTTTAGAGACAACGGATGTGGAAACA # Right flank : CTACAAACTCCAATTTACAAAACTGTAACGTGTTTTAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 51-682 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGR01000016.1 Mycoplasma gallisepticum strain K6372 Contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 51 36 100.0 30 .................................... AACACCGTTAGTGTTTTGTGGTTTGTTAAT 117 36 100.0 30 .................................... ACACCCTAAATATCAAACTCGAACAAGTTG 183 36 100.0 30 .................................... TGTTTTGTGTAGCTATTGATGTCGTAAAGA 249 36 100.0 30 .................................... AAAACAGAATGTAAATCAAATTCAACGTTA 315 36 100.0 30 .................................... GATTAATATATCAAAAACAAAGTTAGGTTA 381 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 447 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 515 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 581 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 647 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 10 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : ATACTTGTGTAAGCAATAACTCAAACGAAAAAATACTTTTGGCGACAACAG # Right flank : CTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 19-1044 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGR01000042.1 Mycoplasma gallisepticum strain K6372 Contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 85 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 151 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 217 36 100.0 30 .................................... TCGGTTATTGAGATCTTGAAACACAAGGAA 283 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 349 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 415 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 481 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 547 36 100.0 30 .................................... TAGAATCTTTGTTAAATAGGGGTCGCGTTT 613 36 100.0 30 .................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 679 36 100.0 30 .................................... ACCAAAAATGATGTTTATACAACCTAGTTT 745 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 811 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 877 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 943 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 1009 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : GGTAAACTTAACGAACTAG # Right flank : CCAATTTACAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50845-51012 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGR01000065.1 Mycoplasma gallisepticum strain K6372 Contig_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50845 36 100.0 30 .................................... TTAGAGGGCTCGGTTCATACCCGAGTTGTC 50911 36 100.0 30 .................................... CCTCAAATTAAAAAAGATATTTTAAAAAGT 50977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : AAAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 2516-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGR01000069.1 Mycoplasma gallisepticum strain K6372 contitg_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2515 36 100.0 30 .................................... ATTGATTGAAAATGTAAGGTTCGTTGTTCT 2449 36 100.0 30 .................................... GTGCGGCGAGGAATTTTAGGCCGACCACGC 2383 36 100.0 30 .................................... AATACTATGACAACTTACATTATAACACTT 2317 36 100.0 30 .................................... ACATAAACTTCGTTGTTCATGTAGGCGTTT 2251 36 100.0 30 .................................... TTGAAATTTGGATGTTTGGGAATTTACATG 2185 36 100.0 30 .................................... GGGAATTTGCACGGCGAAAATCGGCTAATG 2119 36 100.0 30 .................................... AAAAATTTGGTTTTGGGTATTCTGATAATC 2053 36 100.0 31 .................................... AATTTAATCATTCAAGGTTAGTCGTTTGGGG 1986 36 100.0 30 .................................... GTTAATACCGCACTAAATAGTACTGCTAAT 1920 36 100.0 30 .................................... AACAACTTCTTATCCAACCGCAAGCTTCTT 1854 36 100.0 30 .................................... TTAACCAACAAGACTATTTAGGTCTTTTAA 1788 36 100.0 30 .................................... AAAACTTAACTAATTTAACACAAAAAGTTG 1722 36 100.0 30 .................................... ATCTTATTGTTGTTAGCGTTTATTTGACCT 1656 36 100.0 30 .................................... GTAACAGTTTATAAGCAAATCGGGGTAGTG 1590 36 100.0 30 .................................... TCCACCACCCCACTGTCCTACACTATTACC 1524 36 100.0 30 .................................... AATGAAGAGTACAAAAGAATTGTTGATTTG 1458 36 100.0 30 .................................... ACGTAAATAACAAGAACATAGCGGTTTTTA 1392 36 100.0 30 .................................... AATTTAACCATTCAAGATTAGTCGTTTGCG 1326 36 100.0 30 .................................... ATTAATATTTTTATCAGTGATATTAGCTTC 1260 36 100.0 29 .................................... CCAAAAAGTTGAACAAAATAAAACTAGTG 1195 36 100.0 30 .................................... TCATTAAATGTCGATCAAAAAATAAGTACA 1129 36 100.0 30 .................................... AAATAAGACTTTTTTTGAACTTGAAGATTT 1063 36 100.0 30 .................................... TCAAAATCTTGTTTAATACGTTCTACGTTT 997 36 100.0 30 .................................... TGTTTTTAGAGAACATGGTTGTGGTAGCAT 931 36 100.0 30 .................................... ATCTCTCTAAAAAGTTGACGATCCATCACC 865 36 100.0 30 .................................... AAAACTCGATCTAATTTTGAATGTTTTGTC 799 36 100.0 30 .................................... GTGACTTGTCGTTAATGATGGTGTTGTAGT 733 36 100.0 30 .................................... AAGATGGGTGGTTTGTGTAGATAAGTACGG 667 36 100.0 30 .................................... ACTTTAAAGATAAAACAGCTTTAGAAGTCG 601 36 100.0 30 .................................... AAAAAGAAGGTTACAGATTTAAAAAACATG 535 36 100.0 30 .................................... TAGGCTATTGAGATTTAGAAACACAAGGAA 469 36 100.0 30 .................................... TTAGCAAAAACGAAATAACTCAAAACGATC 403 36 100.0 30 .................................... TTAACATTTCAAAAACAAAATTAGGCTATT 337 36 100.0 30 .................................... TAAATAATGTAATTATATCACGTTTGTCAA 271 36 100.0 30 .................................... TTTTGTCTTGACATTTTTGTTTAATATGAT 205 36 100.0 30 .................................... ATTTTTTAAACCCTGTTAAATACATTAATA 139 36 100.0 30 .................................... TATTTTTTTGCAGGTTTATATAAACTATTG 73 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : ACTTGTGTAAGCAATAACTAGAGTTTTTCAAAAATGCTTACATGAAT # Right flank : CTCCCATTCTATTTTAACGTTTGAAAATGAAGTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //