Array 1 8277-9940 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAS01000032.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SF10 Cotig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8277 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 8338 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 8399 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 8460 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 8527 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 8588 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 8649 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 8710 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 8771 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 8832 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 8893 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 8954 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9015 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9076 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9137 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 9198 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9259 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9320 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9381 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 9484 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9545 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9606 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9667 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 9728 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 9789 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9850 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9911 29 96.6 0 A............................ | A [9937] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5560-6685 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAS01000135.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SF10 Cotig_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5560 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5621 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5682 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5743 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5804 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5865 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5926 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5987 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6048 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6109 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6170 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6231 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6292 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6353 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6414 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6475 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6536 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6597 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6658 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //