Array 1 4263484-4257208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064004.1 Xanthomonas translucens pv. translucens strain XtKm8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 4263483 31 100.0 35 ............................... TGCAGGTCAGACCCTTGCGGAGAAACGCCGCTTGT 4263417 31 100.0 34 ............................... GATTCGGATAGCACGAACACGAACATCAAGTACA 4263352 31 100.0 35 ............................... ACGCTTGACGAGGCCGTGCCGCCGCCGCCGCAGGG 4263286 31 100.0 35 ............................... TTGCCAAGCTGCGCGTCTCTATCGTTAGCATACCC 4263220 31 100.0 35 ............................... GCCCAGCGCCCTGTGCAGCAGCGAGTAAAGGCTTG 4263154 31 100.0 34 ............................... TCAGGAGACTGCCCGCCCGCACCACCACCCGCAG 4263089 31 100.0 33 ............................... GTGGCCATAAGCGCGTACAGGGGGTCTCGTGAG 4263025 31 100.0 34 ............................... TTCACCGACCACGAGGGTTCGTTGGTCTGCGCCC 4262960 31 100.0 35 ............................... CAGCATTGCCGCCTCCAGAAGCGCCGCAGCGTCTA 4262894 31 100.0 35 ............................... ATCGTTACCGACGATGACACGGGGGAGTCAAAAGG 4262828 31 100.0 34 ............................... GAGTACTCGGGCAACAATATCCGCATCTATGACG 4262763 31 100.0 35 ............................... TCAAACGGCGTGCAGCGCGGGTTTGCCGAGTTCGC 4262697 31 100.0 35 ............................... GTTGACCAGGCCGGCCTGTACCTGCTTAATCTCCG 4262631 31 100.0 35 ............................... GGCCACTGGCGCACAAACGTTGTTGTGCAGCTTGC 4262565 31 100.0 35 ............................... AATTACTACGTATCGTCGGGCGTCGAGTCCGGCAT 4262499 31 100.0 34 ............................... TGACAAGTCTGCCTGCTCAAGTTCGTCCCGACCC 4262434 31 100.0 33 ............................... TCGAGCGAGGTGCCGAACCCGATGTCCTTGTAC 4262370 31 100.0 34 ............................... TCGTCCTCTGACTTGTGGCTGGGGTGCAGCAGCC 4262305 31 100.0 34 ............................... CGAAATAAATATCCCTACCTGTAGCCCAACGCCG 4262240 31 100.0 34 ............................... TGGTCCAGCAGCGCCAGCCGCGCCGCATCCCGTT 4262175 31 100.0 37 ............................... CCTCTGTGGGTTTCGTGGGCGATACTCGTGACTTGGC 4262107 31 100.0 34 ............................... TTTGCCTGGCTCTGGTCGATGCCCTTCTCGGCGA 4262042 31 100.0 35 ............................... GCCCGGAGCTTGCCCTTTCCGCTCACGTCGTAAAG 4261976 31 100.0 35 ............................... TTCACTGCCACCTCGGCGCGCAAGCGCGCCGGGGG 4261910 31 100.0 34 ............................... AATCGCTGTTGCCTGTACCGACTGTGCATTTGCT 4261845 31 100.0 33 ............................... CTTATCGCGTAGCGGAAGCCTGTCCCGGTAATG 4261781 31 100.0 35 ............................... GGCGAGGCGTGGGACGGCCAGGCGAGCCATTGGGC 4261715 31 100.0 36 ............................... TTCCCCGGTGAGCATGTCCACGATTGCGGAGATGCC 4261648 31 100.0 34 ............................... TTCGGAGGCTCAAGTGGTGTCTCCCTTACTTTGC 4261583 31 100.0 33 ............................... AAGGACGATGGGCAGATTCCTTTGATCCTGGCT 4261519 31 100.0 33 ............................... GGCCTTGGGTCGACCTTGTACTCACTGACCTGG 4261455 31 100.0 33 ............................... TGATTTTCCATTGTCCTCCTCCTCTTTAGCCCG 4261391 31 100.0 34 ............................... TTCGACGACACGGCACGTAACCTGTTCCTAGGCC 4261326 31 100.0 34 ............................... ATGAATTGGAAGTTGCCGCAGGTTGCGGTGGCGG 4261261 31 100.0 34 ............................... ATGGCAGCGTCTCCGGGTTGCTGTATGCGCTTTC 4261196 31 100.0 35 ............................... AACTAAACAACGGATCGAGATTGCAGGAGGATACC 4261130 31 100.0 34 ............................... GTGTATTGGCCTGGAACCGGGGTGGCGGTGCCGG 4261065 31 100.0 34 ............................... AATAGGGTGGCCGCGGGACGCAGATTCTGCAACC 4261000 31 100.0 35 ............................... AATACGCCCAGCACGGCCGCCGCTTATTTGTTTTC 4260934 31 100.0 33 ............................... ACGGCAAGAGCTTGAAGCTGGACCGCTATTCGT 4260870 31 100.0 35 ............................... CAACGTACCGCTGGCGCGCTTTTCGTCCATGAACT 4260804 31 100.0 36 ............................... ACCTTGACGCCGTGGCTGGTACGCATCGAGCAGGGC 4260737 31 100.0 36 ............................... TCAACATGGGCGCGCTGGTATTTACCATCGAGGCGG 4260670 31 100.0 35 ............................... AAAAATGCCAAGACCTTGACGATTCCGCTGTATTT 4260604 31 100.0 35 ............................... AAGTTGTCGGCCGCGCTCTTTCCATACGTGCCGTC 4260538 31 100.0 38 ............................... ATTAACCCGCTCACCGTGGGCGCTGCGGCAATTGCGGG 4260469 31 100.0 35 ............................... CTCCCTAGGGCCATTGCAAGCCGCGAAGTGCCGTT 4260403 31 100.0 35 ............................... ACTAATCGCATCTGTTAAGTTGTCCAAAATAGTTG 4260337 31 100.0 34 ............................... AAGCCCTCAGCGACCGGCGCCGCGGCGTTGGTGA 4260272 31 100.0 34 ............................... CTAATAATGTCGACCGAATCCGAAATCCTCCATG 4260207 31 100.0 41 ............................... ATGGACACCATTGAGTCACCTACGGGGTCGGGCGAAAGGTT 4260135 31 100.0 35 ............................... ATGGACAGTCTCCGGGTTTCTGGGGTGTTGTCGCG 4260069 31 100.0 35 ............................... ATGTTTTTCCCTCTGTGGGTTTCGTGGGCGCTACT 4260003 31 100.0 34 ............................... ATTAAGCAGACTCTGCACATTTGCGGCAATGTCC 4259938 31 100.0 36 ............................... TGTGTCGGTAGTGCAAGAATCGGCAGAGTTCTGGAC 4259871 31 100.0 36 ............................... AAAGAAGACTTGCAGCTGTACCGGGACATCCGGGAG 4259804 31 100.0 34 ............................... TTTCTCTCGGTTGGTGGGCCACGGCGGCCCGGTG 4259739 31 100.0 36 ............................... CGTCTTGCCCGCATCCGGACGCATGCCCAGTATGCC 4259672 31 100.0 36 ............................... ACCGGAGGTCTGGTTTTGAATCCGCCAGCGGATGAG 4259605 31 100.0 34 ............................... ATCGCTGTAGCTCCTGGAGTGCCTGTGCCGCCTG 4259540 31 100.0 35 ............................... TGGATCACCGCCAGCTGTGCGTCGGTCAGGAATCC 4259474 31 100.0 36 ............................... TTATCCGGCTGCGTGTGGCCCGGGAAGCGGTAAGTA 4259407 31 100.0 34 ............................... ATGTGTATTCAGAGGGCTTCGTTAGGACCCTCCC 4259342 31 100.0 34 ............................... TCGCACGGCGATTTCTTTGCGGTGGCCGATGCCA 4259277 31 100.0 35 ............................... TGGTTGGCGATGCTGGATGTGGCCCCGGTCGAGGA 4259211 31 100.0 34 ............................... CTGCTGTCCAAGTCGCCCCGGTATTACTTCGATC 4259146 31 100.0 34 ............................... ACCCGACGCGACGCTCTTCGTGATCCGTGCCGGC 4259081 31 100.0 37 ............................... CCGTAGGCGTAGAGCACCGACATGCCTCCGGCGTAGG 4259013 31 96.8 36 ...............A............... CCGCCAAGGGTCAGGACAAGGCGCCGGCGCCGAGTC 4258946 31 100.0 35 ............................... ATTGCCAAGCTTGTCGCACTCTGCATTGGTGTACG 4258880 31 100.0 35 ............................... TCAAACGGGGCGACGGGAAAAACAGCAGCGGGCAG 4258814 31 100.0 34 ............................... ATCCCACATCATGAGCGATGTGGTCATCTCAAAA 4258749 31 100.0 35 ............................... AATTTCCACATGACCCCCGAAGATGAGGATTCGAG 4258683 31 100.0 35 ............................... TCGATGGCTTCCACGGTGCACTGAAAGCGGCGGGC 4258617 31 100.0 35 ............................... TGCCGTGCTTGCACGCTGCTGTAAGTCCATCAGCG 4258551 31 100.0 34 ............................... GGACACGCAGGGGACCATCCTCAAGATACTGGAC 4258486 31 100.0 33 ............................... ACCACGGCAAAGCCGGCGAGCCGATGACAACTG 4258422 31 96.8 34 ..............................A TCCTTGACCGTGGACATTTTCGTCTTGCTTGCCC 4258357 31 100.0 35 ............................... GTAATACCACACAAGTCAGCGCGGCGCCGGCAGAA 4258291 31 100.0 34 ............................... TTTTGCACAGGGCGACAGCTTCCACTTAGACATC 4258226 31 100.0 35 ............................... GCCACAGCCTTGTCGGACTCGGCCTGCTTGCTCAC 4258160 31 100.0 36 ............................... AAGTCCCAGGTGGCCTCGGCTTTAGGCGTGCCGCAG 4258093 31 100.0 35 ............................... TTGGCCTGGCGGACTGCCGCGTCGAACCGCCGCCG 4258027 31 100.0 35 ............................... ATTGAACTCGCTGTGGCGTGCAACAACCGCCGCCC 4257961 31 100.0 36 ............................... TTCCTGGACAACAACCCGGGCGTGGTGCTGGAAGAG 4257894 31 100.0 35 ............................... TTGGATAGCCGCCAGATTGCTTCGGCGCGGCTGTC 4257828 31 100.0 35 ............................... CGGTATATCTGCTGCGCTTGTGACAACACGTCTTC 4257762 31 100.0 33 ............................... GCGTGCTGGGCGCCGACGGCGGCGAGAAGTGGA 4257698 31 100.0 35 ............................... AAGATCAACATCCCCGGTGCCAGCACAGAAGTGCG 4257632 31 96.8 34 T.............................. CCGGATGGGCGCACTTGGGGCTACGACGTGGTGA 4257567 31 100.0 34 ............................... GTACGCCTGCCGGAACCTCGGAAATTCCACGCCG 4257502 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 4257437 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 4257372 31 100.0 35 ............................... TCGACCCAGGAGCCGAACGATGCGCTCGAGAGCCG 4257306 31 90.3 33 ...............T....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 4257242 31 93.5 0 ...............C.........C..... | G,G,G,T [4257212,4257232,4257234,4257238] ========== ====== ====== ====== =============================== ========================================= ================== 96 31 99.7 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCACCGCGCCATGATGGTTCTGATCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGAGGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //