Array 1 428601-426713 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCFQ01000002.1 Serratia marcescens strain 2880STDY5683032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 428600 28 100.0 32 ............................ TGCTGCATCACGAAACGCCGCTGGTGTATTGG 428540 28 100.0 32 ............................ CGCGACGGTCGGCATACCGAACTTGTCCAGGA 428480 28 100.0 32 ............................ TGTTCGGCGGCTCGGCCGGTTTTGCGGTTGGC 428420 28 100.0 32 ............................ TGGCGGGTGAATACGCGCCGCGACTGCGGGGA 428360 28 100.0 32 ............................ AATCAGGGGGCAATAATGGCGACGATTGACCT 428300 28 100.0 32 ............................ ATTACGGCCTGCGTGATAAAGTCAGCCGGAAC 428240 28 100.0 32 ............................ TTTTCATAGTGGTTTCACAGTCCCTTGAATAG 428180 28 100.0 32 ............................ GACCGGAAGTGGGTAAGGTTCGCCTGCGTCAA 428120 28 100.0 32 ............................ AATAATTCAGCAATATCGAGCAGGGGGATTTT 428060 28 100.0 32 ............................ GAAATGCGTGAAAACCGTGGTGAGATTTTCGG 428000 28 100.0 32 ............................ TTACTGGATTATTAATCACCCCGTGGGCGTCC 427940 28 100.0 32 ............................ AATCAATTTTTATCTGAATCAGGACAAACAAT 427880 28 100.0 32 ............................ GGATGAATCGCGGCGTGATATTTCCAGATGAC 427820 28 100.0 32 ............................ TATTCCGAATGCGTTAAAGAGTTGCCCAAATA 427760 28 100.0 32 ............................ TGCAGGACATTGAGAAGGTTCGCGCGGCGAGC 427700 28 100.0 32 ............................ TTCTCATTTTTACCCTGTGCCTGCTGACTGCC 427640 28 96.4 32 ...........C................ GGTAAATCATCCCACTCGCACGTTCGCATATC 427580 28 96.4 32 ...........C................ TCGCCAGTCTTACCGCTGTGCTTGTACCACAG 427520 28 96.4 32 ...........C................ TTATTGAAAAGCCCGCGTTTCGCCGGCGGCTC 427460 28 96.4 32 ...........C................ GTCACCGGCAGGAACGGACGCGGGCGGATCAC 427400 28 96.4 32 ...........C................ AGGACGACCTGAACACGTTTGTGCAGCAAGTC 427340 28 96.4 32 ...........C................ GAGGATTTGGCCGTGTTTGAGCAGACGGTCAA 427280 28 96.4 32 ...........C................ TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 427220 28 96.4 32 ...........C................ TGCGGGCGCAAAACGGCAATCAGATGAACCTG 427160 28 96.4 32 ...........C................ GTTGACCGCCGGTACTTTCACTGCTGGCCTGC 427100 28 96.4 32 ...........C................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 427040 28 96.4 32 ...........C................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 426980 28 96.4 32 ...........C................ TAAATGGTGCCAATTCGCAAGTTTGTTACCTT 426920 28 96.4 32 ...........C................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 426860 28 96.4 33 .............C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 426799 28 96.4 32 ..G......................... CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 426739 27 82.1 0 T............C......T..-...T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCAGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCTGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCGCTGCTACGGTACCCTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACTGAGGGATTTGCCTATTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTTGTTCA # Right flank : AGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGCTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 438701-437082 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCFQ01000002.1 Serratia marcescens strain 2880STDY5683032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 438700 28 100.0 32 ............................ TGGTGCAAATACAGCGAGTGTTGCGGTAGAGG 438640 28 100.0 32 ............................ GCCGGCATAAATCCACTGGCGCAGGCCGTCGC 438580 28 100.0 33 ............................ GCCAGGGCCTCGACCGCATCATGATCGGCTGGA 438519 28 100.0 32 ............................ GTCCGCATTGATTTTCCCGACGGCGCGGTCAT 438459 28 100.0 32 ............................ ATCACTAGCGCATCCAGATTGTGATAGTCGCC 438399 28 100.0 32 ............................ GAAAGCAAATACTGCTGAGTCGGGCCAGCCAG 438339 28 100.0 32 ............................ ACTTAGTGCTGGGTGGGTATGGTGCAAATGCT 438279 28 100.0 32 ............................ TGGTCACCGCCGGACAAGACGGCACGCCCCGT 438219 28 100.0 32 ............................ TATGACACCGACCGCAGCCGCGGCGTCAGCCA 438159 28 100.0 32 ............................ AACAAAACCTACCCGGCGAGAAAGCTGTACCC 438099 28 100.0 32 ............................ AGGCGCACGACAAGCGGGTTTAAAACGATGCG 438039 28 100.0 32 ............................ AGTGAAACCGATTGAAAAGTTTCACGCGAAAC 437979 28 100.0 32 ............................ GTTAGAATATTTGGTGTGAATAGATTGCATGG 437919 28 100.0 32 ............................ ACAAACTCAACCTTGCGCTGACGGGTGTTGCG 437859 28 100.0 32 ............................ AGCCACAACCCAAAATCGTTATCAAGCGCCAT 437799 28 100.0 33 ............................ CGCTGTAGTTCTGCCCATCAAATTTGACACCCT 437738 28 100.0 32 ............................ TTTTTCGCGGGATCATACAAATGCCAGTAAAT 437678 28 100.0 32 ............................ GGGAACGAAAGCACGCTGCAGGCCGCCGCCGA 437618 28 100.0 32 ............................ AAACTCATCGACAACGTTGGCAATTTCACGAA 437558 28 100.0 32 ............................ GGCACAAGAAGAGGTTTTTTGCCTTCTTTCCG 437498 28 100.0 33 ............................ ATGAGCGCTACAACAACCAGATAAGGATCTAAC 437437 28 100.0 32 ............................ AGCCTGATAATTTGTCCAAATCGCCACTAATC 437377 28 96.4 32 ...............A............ CCGGACAGGCCGGCGCAGATCCACAGTTCGTC 437317 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 437257 28 92.9 56 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCGGTGCACATGCGTTGGTAGTAGATGA 437173 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 437112 28 96.4 0 ....................A....... | G,A,A [437085,437089,437091] ========== ====== ====== ====== ============================ ======================================================== ================== 27 28 99.2 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGTCAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTTGGCAATTCAGGTCATCTGTGGGGGCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCTCCCTAAAGTGCAGAAATGTCACCTTACCCCGTTCCTTTTTGCCGAACCCTTTTTTGAGTGTCACTTTTAATTTATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //