Array 1 163059-160528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163058 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162997 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162936 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162875 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162814 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162753 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162692 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162631 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162570 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162509 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162448 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162387 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162326 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162265 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162204 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162143 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162082 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162021 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161960 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161899 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161838 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161777 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161716 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161655 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161594 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161533 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161472 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161411 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161350 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161289 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161228 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161167 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161106 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161045 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 160984 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160923 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160862 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160801 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160740 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160679 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160618 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160557 29 93.1 0 A...........T................ | A [160530] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181181-179566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181180 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181119 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181058 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180997 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180936 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180875 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180814 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180753 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180692 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180631 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180570 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180509 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180448 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180387 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180326 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180265 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180204 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180143 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180082 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180020 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179959 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179898 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179837 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179776 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179715 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179654 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179593 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //