Array 1 454327-455819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHIBJ010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SBJ0C3 NODE_2_length_600102_cov_51.979526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454327 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454388 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454449 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454510 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454571 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454632 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454693 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454754 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454815 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454876 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454937 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454998 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455059 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455120 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455181 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455242 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455304 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455365 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455426 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455487 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455548 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455609 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455670 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455731 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455792 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471951-473915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHIBJ010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SBJ0C3 NODE_2_length_600102_cov_51.979526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471951 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472012 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472073 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472134 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472195 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472256 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472317 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472379 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472440 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472501 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472562 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472623 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472684 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472745 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472806 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472867 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472928 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472989 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473050 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473111 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473172 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473234 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473337 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473398 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473459 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473520 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473581 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473642 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473703 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473764 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473825 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473886 29 96.6 0 A............................ | A [473912] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //