Array 1 1016668-1017856 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGFR01000001.1 Escherichia coli strain NCTC9069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1016668 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 1016729 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1016790 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1016851 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 1016912 29 96.6 32 ..........T.................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1016973 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 1017034 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 1017095 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 1017156 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1017217 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1017278 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1017339 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1017400 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1017461 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1017523 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 1017584 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 1017645 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 1017706 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 1017767 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1017828 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCCGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1039720-1040236 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGFR01000001.1 Escherichia coli strain NCTC9069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1039720 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 1039781 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1039842 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1039903 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1039964 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1040025 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1040086 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1040147 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1040208 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTAGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //