Array 1 762242-759029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFE010000003.1 Bifidobacterium pseudocatenulatum strain YIT11951 YIT11951_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 762241 36 100.0 36 .................................... GCGCGGGATTGGCCTGCCTGCCGCTGTTGGTGTATG 762169 36 100.0 36 .................................... GGTGCGTACCAAGGGCACCGACGATTATCAGCAGCG 762097 36 100.0 37 .................................... GCGTACAGGCTAGTGGTGCCGTCTGTGGCGATGGGGA 762024 36 100.0 33 .................................... CAATGGTGTGTTGGTTGGTGGGCGAAGCAATGT 761955 36 100.0 36 .................................... GAAAGAACCGCACCTCCGATCATCGAATCTGAATTT 761883 36 100.0 36 .................................... TCGATGGGCATTCCGCAGAGCCAGCAGACTGCATGT 761811 36 100.0 37 .................................... CGCTCGTGACTTTCGTGATCCAGTCCGGCACGTGGAC 761738 36 100.0 38 .................................... TGGCTATCGTGCCGTCGCTCACGGATCCACCGCCGCTG 761664 36 100.0 34 .................................... TGAATGTTAGTTGTTGATGATGGAACAGTTGGAA 761594 36 100.0 38 .................................... GCAACGTGCCCATGCCGTCTAAAAGTGGTCGAATTCGA 761520 36 100.0 36 .................................... TCCGCTGAAAATCGTTGTTCTGCCGGCTCCAGCGTG 761448 36 100.0 36 .................................... ATGAGTCGCGGACGTTACGAAGTGTTCGAAAAAATC 761376 36 100.0 35 .................................... GGTGAGCACGAGTGGCCGTCCTATATGAGTCGCGG 761305 36 100.0 37 .................................... CAGCGGCTTGCGCTGACTCCCGGCAAACATTCGATAA 761232 36 100.0 35 .................................... GCGAGCACCAGAGCGGCCTCCTTGGGTTTCAGCAT 761161 36 100.0 37 .................................... GATTTGATTAACGAGCTGCTACCGGACGCCGACGTGT 761088 36 100.0 35 .................................... TCCAAGAGGCCGCTCACGAGCCGACCGACGAGGAA 761017 36 100.0 36 .................................... TAGTCGAGCATCTGCGGACTGCTCCACCCGCCTGCG 760945 36 100.0 35 .................................... GCCACCACCGCAAGCCAAACGGACTCTACCGGAAA 760874 36 100.0 37 .................................... ACGGTCGTCTTGTGCGATGGCGTCTGGCGTCGCGCGC 760801 36 100.0 35 .................................... ATGATTTCGTGGATGGTGCTTTCGGTCGCGTTCAA 760730 36 100.0 37 .................................... GCCGGTGGCGGCGGCGGAGATCAGGGAGGCACGGGCG 760657 36 100.0 39 .................................... TGGAATGGTGTCGGCTGGTGACCAGCGGTATGCTGGCGG 760582 36 100.0 35 .................................... TTATAGCGTTCCGGTAGGCGGAACATGTTGCGAAA 760511 36 100.0 34 .................................... CTAAAAGTGGCGTGCGTGCAATGTCGATAGCGTC 760441 36 100.0 35 .................................... AACAACAATGTGAGCACGGCAAACCAACAATTGGC 760370 36 100.0 38 .................................... TCGACCCATGAGGTGCCGGCTAACCGGCGCGTCGATGT 760296 36 100.0 37 .................................... GGCCGTGAGCGCTGCGATGAGCGTGATGACCAGCATG 760223 36 100.0 35 .................................... AGGATCACCGTGACGATCAGCAACAACTCCACCTG 760152 36 100.0 36 .................................... ATGGCGCAGAAATACGGATGCCTCGACCAAGAGACA 760080 36 100.0 38 .................................... CGGCACGGAAGACAGGACGGGACACGTCAGGCGATCGG 760006 36 100.0 37 .................................... GTGGCGTTTTCGGTGGCGTCAAGTCAGTCGCGTCCGA 759933 36 100.0 37 .................................... TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 759860 36 100.0 38 .................................... GATAGGCAATGTTTCCATCAAAATTATATCATGCGGCG 759786 36 100.0 37 .................................... TCCATGCTCATACCGGTGGCCGGCAGCGTGTCGCGGG 759713 36 100.0 36 .................................... GCTAAGACTGGCGAGGAAGTCGTGGAAGACTGCAAG 759641 36 100.0 37 .................................... CCGACCAGCCGGGAAGCCGTCCAGCAGACGAATACTG 759568 36 100.0 36 .................................... CAGCCGCAGCTGGCCGCAGCCGTCAAGGGCGTGACC 759496 36 97.2 35 ...................................G GGAAAGCTATCCGGTCGTTTAATCGCCGATCAGAG 759425 36 100.0 37 .................................... CTCGACGGTGACAAGGTCGGCAGCGTCGTCAACGGAT 759352 36 100.0 36 .................................... GCGCGCGGCGGCAATCCGGAGACTGAAGCCAGGTTC 759280 36 100.0 36 .................................... GAGCTCGTCTTCCGGCGTCAGTGCTTGTTCGTTGCG 759208 36 100.0 36 .................................... GAGAGATAATAGTTGGCGAGCCACTGGCTCAGATAG 759136 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 759064 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================= ================== 45 36 99.8 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGTGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCACGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATCGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //