Array 1 60743-60055 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGE01000001.1 Yersinia pseudotuberculosis strain 18-YE00011 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60742 28 100.0 32 ............................ TGCTCCTCGTTCTGAGACAACGAAATTCAGTA 60682 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 60622 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 60562 28 100.0 32 ............................ ACCCACACGCCGCCTGCCCATTCGCCGGTAAC 60502 28 100.0 32 ............................ GATCTACTTCGCGATACCGCCCATCGCTGGCT 60442 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 60382 28 100.0 32 ............................ AATCATCAGTAACGTGTGTTCTTTCCACAAGA 60322 28 100.0 32 ............................ ATTTGCATAAACTTCACACGCTCGACTTAAAT 60262 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 60202 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 60142 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 60082 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : GGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 136486-133572 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGE01000010.1 Yersinia pseudotuberculosis strain 18-YE00011 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 136485 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 136425 28 100.0 32 ............................ AATTAAATAAGGTAAATAAGGTAGCATGTTAT 136365 28 100.0 33 ............................ AGATATGGAAGAAATAAAAGCGGATTTTTCTAT 136304 28 100.0 32 ............................ TGATGCGTTTCATACAATGACTGTACGTGTTT 136244 28 100.0 32 ............................ TCACGAGTTTTAACATAAGTAAATGTACTACG 136184 28 100.0 32 ............................ AAAGAGAAGCCCCTCATTATGAATGATCGGTA 136124 28 100.0 32 ............................ AAACTACTATTAATTTATTAACTCAAAATGTC 136064 28 100.0 32 ............................ TCGTTGAAAGAACACATGTTGATGATGATTGG 136004 28 100.0 32 ............................ ACTAATGTTTATATATCTTTAATATCTGAGGA 135944 28 100.0 32 ............................ ACCATAAAATGTATGGTTATATGATTTTACCC 135884 28 100.0 32 ............................ TTGTAGCTTTAACACTAGCAGAACTACCGACG 135824 28 100.0 31 ............................ TGTAGACGCTTATGCTCAGGTTCTACTAACA 135765 28 96.4 32 C........................... AACACGTTGGATGAATCACAACAGTTAATTAT 135705 28 100.0 32 ............................ AGCCACGTTCTCCCACCGGTACGGCGATAAAT 135645 28 100.0 33 ............................ CCACAGTATCATTATTATGACCGATGCCGACGT 135584 28 100.0 32 ............................ CATATAAACCGGTTATTTCATAAAGATTTTTT 135524 28 96.4 32 A........................... ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 135464 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 135404 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 135344 28 100.0 32 ............................ TTAAAAGTGATGCTAATTCAGGAAGTGCGGAT 135284 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 135224 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 135164 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 135104 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 135043 28 100.0 32 ............................ TATCTGGAATCCCAGAAGTATTATTAGCTATT 134983 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 134923 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 134862 28 100.0 32 ............................ TATCTGGAATCCCAGAAGTATTATTAGCTATT 134802 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 134742 28 100.0 32 ............................ GTGTCAGCTTTTAACGCATATAATGAACCAAT 134682 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 134622 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 134562 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 134502 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 134442 28 100.0 32 ............................ ACCAGCCTCCCAGCTCATAACCGTACGGCCAA 134382 28 100.0 32 ............................ TGTAAATACCCGGACAAACAAGACAACTCCTG 134322 28 100.0 32 ............................ CTCCGGAGTCACAACCATCTCAGAACAGATGT 134262 28 100.0 34 ............................ CCAGATTTGATTGGCGTGGGTTACTACGTTGAAT 134200 28 100.0 33 ............................ AATTGACACTAGCACGTTACTTAATAGTCAATA 134139 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 134079 28 100.0 32 ............................ GCATAGTTAAGGGGTAAGAGATGAAAACTGAA 134019 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 133959 28 100.0 32 ............................ AGTGGTGATTACGCAATGCAGCAAACATATAA 133899 28 100.0 32 ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 133839 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 133779 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 133719 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 133659 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 133599 27 85.7 0 ...................A-.A.T... | C [133575] ========== ====== ====== ====== ============================ ================================== ================== 49 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 82779-83106 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGE01000013.1 Yersinia pseudotuberculosis strain 18-YE00011 NODE_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82779 28 100.0 32 ............................ TGCTGAGATTCCAGTATTCTGAATTAATTTAC 82839 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 82899 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 82959 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 83019 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 83079 27 89.3 0 .....................CC.-... | T [83105] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //