Array 1 368910-367613 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFR01000011.1 Eilatimonas milleporae strain DSM 25217 Ga0170459_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 368909 36 100.0 30 .................................... GCAATGCCGGCGTGCTGGTCGAGACCGGCA 368843 36 97.2 30 .................A.................. GAAAGTGTTCATGGGCGTGCGGTCATTGGT 368777 36 100.0 30 .................................... GGCGATGACGACCCGCCGAGCGCGAAGGCG 368711 36 100.0 31 .................................... TTTAATGAAAACACAAGCGTTGGTGAATTCT 368644 36 100.0 30 .................................... GCGATTTTATACGCCTTCCACATCCAGGAT 368578 36 100.0 30 .................................... GATGAATATCGGCGCCGCCGCAAACCGCAC 368512 36 100.0 30 .................................... AATCGGCGCGCTGTTCAGCCGGTGAGGTTT 368446 36 100.0 30 .................................... AATATGAAATGTCTGCCCGTGGCGCTTCAC 368380 36 100.0 30 .................................... GGTGTCGATGAGCGGGAGGCGGACCATGCA 368314 36 100.0 30 .................................... CTCACCGGACAGCCATCGGCGCATCGTGCG 368248 36 100.0 36 .................................... TAGGCTCGCGCTCCCCGCCCCCAATACCATGGTGAA 368176 36 100.0 30 .................................... ATATCTTCCAGATGCCTGTCCACATGATCA 368110 36 100.0 30 .................................... GGGTCGGCAGCTCGGCCTGCTCGACTTTTC 368044 36 100.0 30 .................................... GAGACATATGAGCATTCCGGACCGGTCAAG 367978 36 100.0 30 .................................... CAAGCCCGGATCATCACCAAGTGTAACAAA 367912 36 100.0 30 .................................... TTGGCGCGGTGGCTGTCATCGTCATTTTAC 367846 36 100.0 30 .................................... TTGATGTGGCTGATAACTGTACCTTCACTG 367780 36 100.0 30 .................................... TCCGAATGGCAAAGCCAGATGGACCGGGCA 367714 36 100.0 30 .................................... CAGAGACCCGAGCGTAAAGCCGGAAGACGC 367648 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 20 36 99.9 30 GCCGTGGTTTCCCTACCGATTTGCCCATGGTAGGCT # Left flank : TTTAGTGACAGTTAAGGCCTTTCCTTTGGTGGACGGCATAATAGGAGCACAATATATGTTGAAAAGAAAAACGCTAAATCAAAATTCCGGTATTGCGGCATCATAGGCTATTCTAAAATAATATTTCGCGTTTCCATCGCGAGCGGCTCCAGCCACCGCTCGCAAGACTTTGTACAATTATCCATGCCGCAGTCTGTCCTTAATGCGTTCAATCGGCATCAAATAGCGGCAAACTAGCGAAATCGGGCTGAGTTGATATTGTGAGCTGCAACCTCAGTAAAACCGGTAGCGATACTCAGCTGCAGAGCGAGTGGTCGTCCGAAACATTCCCATTGCGGACACAAGCGGTTCTGCAGCGAAGAACCGCCTTGGGCGGGAAGCGGAAGTTCGCTGCAGATGCAGAATTCAGCTATTGATCTATCGTTAGCGGACATTTGTGTGCCCTTTTTTCGATTTGCCCATGGTAGGCTGATGACAATTGGACCCCAGTCCGCCATAAA # Right flank : GCCTCTACGGCAACATATTGGAACTGCTGTGATTTTCGCGGATTATTTGCCGCCGAAATCACAGCAGGACCATTTGTGACGTTCCGGCAGTCTCGGTTTTTGGCGCGGTCCCGAGCATTAGTTGCATCCTGCCATACTGCTTATCCGTCACCTGGAGTGTCCTTACGCTGCCCTCCTTGGGGAGGTTCGAACGCACCCTTCGGACGTGCTTTTCCACCGCATCCTGCCCCCTGCAGACGCGCGCGTAAACGGATAATTGCAGCATTATGAAGCCGTCTTTTCTGAGGAATTCCCGAAAGCGATTGGCGCGCCGCCTTTGGGGTTTGGTTTTTGTGGGCAAATCGAAGAACACCATCAACCACATGAAGCGAATCTCCCCAGCCTCCATGGTCATCCTCGTCGCGCCAGTGGCAGAGCAGGCGTGTTGAGCAAAGTGGCATCGCGGCTTTGGATGGCACGAACAAGGCTGGACGTAACGGCTTCGGTCGCCGCCAAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCCATGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 415068-413974 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFR01000011.1 Eilatimonas milleporae strain DSM 25217 Ga0170459_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 415067 36 100.0 30 .................................... TCTTTTCCAGGGCTCAAGCCTCGATCCCGC 415001 36 100.0 30 .................................... GGAGCCAGGCAGGACGATAGGGGCCTGATG 414935 36 100.0 30 .................................... AGTTTCGCGGCAATTTGGACGAACGGTTCT 414869 36 100.0 30 .................................... ACCAGTGATGTATTTTGACGCGAAGCCACG 414803 36 100.0 30 .................................... TTTTTCCACAGGCTTAAGCCCTGTGCGGTC 414737 36 100.0 31 .................................... TATCCACCGCGTCCCCCGCACGAAAACGGTG 414670 36 100.0 30 .................................... GACAGCGTGCCGGACCCCTTGACGGGTGAG 414604 36 100.0 30 .................................... TCCGGTCCTGATCCATGCCCATGAGCAGGC 414538 36 100.0 32 .................................... TGCGCAATCTGGCGGAGGCGGAGGCGACATCG 414470 36 100.0 29 .................................... TGAAGGGCACATTTGCAAAAACAGTGGCG 414405 36 100.0 30 .................................... TTTACGGAAACTTATAATTCAAGCCCTTTG 414339 36 100.0 30 .................................... CGCGCATCCATCACACCGCCGGAAAAACGC 414273 36 100.0 30 .................................... GCCTCGAGGTCGAGCGCGCCGCCGCCGACA 414207 36 100.0 30 .................................... AGACTTCCGGAAGGCGGGTTTCGCCGGACC 414141 36 100.0 30 .................................... ATTATTTGGCTCCTAAAGACTGATAGATTT 414075 36 100.0 30 .................................... GCCATCAACTGACGGTCCCGCTGTTCCATG 414009 36 80.6 0 .......................AAA..G..AT..G | ========== ====== ====== ====== ==================================== ================================ ================== 17 36 98.9 30 GTTATAGCAGATCTGAAACTGCGGGCCGACCGCAAC # Left flank : ATGAGGGCGACGGCGGCACGCTGGCCCTGCCGGAGGCGCCGACCGACCTGCACCTGGCGGCGCTGTTGAACCCGGATGTGTCAGCCTGAGCGGCCCGGCCATGCATCTGAGCGGATACCGGATCATGTGGATGCTTGTCATGTTCGACCTGCCGGTCACGGAAAAGCCGGAGCGCAAGGCGGCCGCGCGCTTCCGCCATTTCCTGCTGGACGAGGGGTTCGAGATGTCGCAATTTTCGGTCTATGTGCGATACTGCAAGGGCAAGGAACAGGTGGACGCCATCGCCGGCCGGATCGAGCGCGCCCTGCCCGAAGCCGGCAAGGTGAAAATCCTGAGCTTTACCGACAAGCAGTATGAAAGCATCAAAAGCTTTTACGGCAAGGCCCCGGATTCGTCCGAAAAACCGCCCGATCAACTGACCCTTTTTTGACCATGGACCCGTTTTTGACAAAAAATGTCCGGAAAAAGCCGATGGATTTCATGGCATTATCCGGACATCC # Right flank : AAAATGCCGGCTGACTGACTGATCAGTCCCCCGGCTTTCCCCCGGTGGTCGTGTGCGGCGCTGTCCCGGCCCGGCCCGCCATGCTGTGGCGCGCGGGCCGTCCCTACACCTTTCCCCCACATCCCGAACATTACACCGATGTAATGCGGCGGCCATGCCGGCGTAAGGGGGCGGCTGTCATGGTGGGGTCAATCCTGGCCGTTCCGCTTGTGGGCGGCGCCTTTTGGAAAGGTGAGAGAGACCTTATGACAGCCCTTGCGACATTCGCGGAGTTTTACCGCAGCCTCGGCCCCGGTTCGGCGGCGCGCCTGCCACAGGTTTACAGCGACAGCGTGGTGTTTACCGACCCCGTCACCCGGCACACCGGGCTGGCGGCGGTGGCGCGCTATTTCGACAGATTGCTGGAAAACTGCGTGTCCTGCCGGTTCGACATCACCAGCATGTCGGTGCGGGCCGACACCGGCTATGTGTCCTGGACCATGCGGTTCCGCCACCGGCGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGCAGATCTGAAACTGCGGGCCGACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 421594-420301 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFR01000011.1 Eilatimonas milleporae strain DSM 25217 Ga0170459_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 421593 36 100.0 31 .................................... GACGTAAAGCCGCGCCTTGACCATGACCGGC 421526 36 100.0 30 .................................... ACAGTGCATCGGCATAATCAACCCTGACCT 421460 36 100.0 30 .................................... GAGCCAGCCGTTGCATCTGTCGAGACCAAG 421394 36 100.0 30 .................................... CGGAGGCCGGCGCTTGTTGCGGTGAGACGA 421328 36 100.0 30 .................................... CCTGCAGGCGCACATGCGCCAGCGTGTCCA 421262 36 100.0 29 .................................... TTCTGGCTGTGGCAGACGCGGGCGAAAGG 421197 36 100.0 30 .................................... GTTGGTATGGCGCGCGGTCGGTTCTCCATT 421131 36 100.0 30 .................................... TGGAGACTGTCACCGGATGATAGCTCTTTC 421065 36 100.0 31 .................................... CTCACACCGTCGGGCTTAGTTGGGTGTATGC 420998 36 100.0 30 .................................... TTTTTTGTCGATTGAGAATGGCGACCATGG 420932 36 100.0 30 .................................... TGTGATCTTCAAGGATTTTTTTCAGGCGTG 420866 36 100.0 30 .................................... GCATGGGTCCGGCTGGCATTTCAGAGGGTA 420800 36 100.0 30 .................................... TGTCCTCTATGACTTCATTCGCCCTGTTAT 420734 36 100.0 30 .................................... TCCAGTCGCACACCACCGCGCAGGACACCG 420668 36 100.0 30 .................................... AGGCCGCGCCGATGGATATGCCCATGGGGC 420602 36 100.0 30 .................................... GCGACGCGTTGAGGGCCGACCAGATGCTGG 420536 36 100.0 30 .................................... GCGAACGCGACAACACCGACGCCAGAAATT 420470 36 97.2 30 ..............................T..... TTCTTTCGTAAGCACCGCTTTGTGGACTTC 420404 36 100.0 31 .................................... CGGTCCCCGCAGCGTGGCCTCTGGTCCCGGT 420337 36 80.6 0 .............C.....C...C....G..T..TT | T [420306] ========== ====== ====== ====== ==================================== =============================== ================== 20 36 98.9 30 GTTATAGCAGATCTGAAACTGCGGGCCGACCGCAAC # Left flank : CGCGGCGGCGACCGAGCAGCAGTCGGCGGCCACCGGCGACATCAGCCGGACGATCCAGAAAGCGTCCGACATGACCCGGCAGGTGGCCGACCGGATCGCCGCCGTCAACGAAACCGCCACCCACACCATGGCCAGCGCCGACGCCCTGGACACGGCGGCGCAGGACCTGGCCCGCGCCGTCACCGCCCTGCAAACCGGGTCGGAGCGTTTCCTCGCCGATATCCGCAGCGCCTGACGGACCGGGTATTGAGCCCAGAAGACCGGATATGGGGACGGGACAGGGGAACGGGCACGGCGGCCGGCCCGTTTTCCGGCCCGCGCGGCACGGGGATGTGGTATCATGCCCCTGCCCCGCCGGCGCATGCCACAGCCGGCCGGGCATCCGCGTGATTCGCGGAAAAAACCAGCAACCGACAGGCCCCTTTTGTCACCATGGACCCGTTTTTGACAAAAAATGTCCGGAAAAAGCCGATGGATTTCATGGCCTTATCCGGACATCA # Right flank : GTCGCAGGCTGGCCGATCCTGCGACACTTTACCAGCCACATATATGACGCCACCGTCGGACCGGCCGGCCGCGCGCCGTGGACAGTAAAAAAAGACAGGGGACAGTAAAAAAGGGCAGGCCGTGGCCCACCCCTTATCTGTTGCTCTGAAAGCTTGTTAACGGTCAGACCGCAGTTTCAGATCTGCTAGACAGGTATGATAATAAGCGAGCCCCATTGAAATGGCAAGGTGGCTCCCCCATAAAGTCAAGAGGTGGAGAGAAAGACCGGCACGCGGGTGTGGACCCCGCCGACGGCCCCTGCGCAAGAGGCTGGCCGGCCTTTCTCCCGCCCAAGGTGTGGCCCGAAGGCCGTCATCATCATCTGATTGCACGCTTCCGATGTCAAATAATTTTTCCTAGACACTAGATATTTTTATACATGCTGCTATCATTCAAATTGACATTTAAGCTCTTGCAAAGAGTTACAAGTGTCTGTTGCGGCCAGCCGCGTTTCAGATCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGCAGATCTGAAACTGCGGGCCGACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 4 611853-611359 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFR01000011.1 Eilatimonas milleporae strain DSM 25217 Ga0170459_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 611852 31 100.0 35 ............................... TTCCGTCAGTTGGTCGCGCCTCTGCAAATCGTCGA 611786 31 100.0 34 ............................... CCCATGGGCACGCGGCTCATGCTTTCGACGCCGC 611721 31 100.0 36 ............................... GACCTGGCGCGCCGGCATCTGGGCGATCACCGCCAC 611654 31 100.0 36 ............................... CTGACCTGGCTGCACGGTTTTGATTCCTACGCCCTG 611587 31 100.0 36 ............................... ATACCAAGCGGCCCGGATGGGCGGGCCTTTTGACCC 611520 31 100.0 35 ............................... CGATCCGACCACCAAGCCGATTCAGGTGATCGGGG 611454 31 100.0 34 ............................... GAGGTGTTTCTGGTCCATGAGTGGCCGGCCAGCC 611389 31 96.8 0 .......................G....... | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 99.6 35 GTCGCCCCCACACGGGGGCGTGGATTGAAAC # Left flank : CGGCGGATAACGGGGGACACCGGCCATGATGGTTTTGATCAGCTATGACGTCCGCACCGCCGACGGTGCCGGCCGACGGCGCCTGCGCCGCATTGCCAAGGCCTGCCTGGATTACGGCCAGCGGGTGCAGTTTTCCGTCTTCGAGTGCGACGTGACACCGGCTCAGTGGACCGCGCTGAAAGCCAGCCTGATGGACGAAATGAACCCGGCGGAAGACAGCCTGCGCTTCTATTATCTGGGCAAGAACTGGCGCCGCCGGGTCGAACATGTCGGCGCCAAAGCCGCCCGCGACCCGGACGCCCCGCTGATTTTCTGACACCCCGCGCGATCCCCAAGCTGCCGGCAAATCCCAGGGGGGTTCGCGCACGGCGGAACGCCGCGCCCAGCCTGCCATGCGACCGCGACCACCGGGCACCGCCCGCACAAACCGGTCGCCCTGACACGGGGTTCGCGCTACACTCGGTATTTCCCGTTCTTTGACAATGTCTTATAAAACCACA # Right flank : AAGTACGCTGGGCGCCGTCCTCCAAGCGGGTGCGGGCGGCCCAACGTACGCCGACCGGCCACGCCTACGCCGTACGCGCCCCGGAGCGCGAAAACTGGGGACAGTATCCTGTTTTTCAGATGCACAGTCTGTGCACTAAATACTTGAAAAATATGAAATAATTTTCAATATCCGAGTATTGAAAAACCATATACTGTCCCCGATTAAATTGGGGGTGGGCGCAAGGGTGGGCGCGGAACCGGATGATCCTAGCCCGGTCCGCCGGGCCCCTTTCCCTGTGTATCCAGCCTTGTCATCAGGGGATCAGCCCGCAGCAATGGGGGCGCGCGCAGACCGGCCGGGCGCGATGACAACACCGCACCCGGCCTGCCTGTTCCCGTCACCGGGTGTTACCGGGTCCAGTCACACAGGGCCCGCAGGCGCGCCCTTTCCTCCTCCTCCCACGGCAGGGGGGTGCGGATTTCCGCATAAACCAGTTCTTCGAAGCCGCGTTGATCGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCACACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 622239-620564 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFR01000011.1 Eilatimonas milleporae strain DSM 25217 Ga0170459_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 622238 31 100.0 35 ............................... AATCGGAACGTGAACGGCATAGCTGCCGAGAACGG 622172 31 100.0 34 ............................... ATAGATTTGGCATTTTTGCCCCCTGTTAGTTGCC 622107 31 100.0 34 ............................... AGATTGACGCAGCACCTTTGCCGCTCAAAACCTT 622042 31 100.0 39 ............................... ATCCAGTCCACGGACCCGGCTGTCTTTGTCGATGCGCGC 621972 31 100.0 33 ............................... ACCAAGACGCAGAAAGTCGAGAAATGCGGCAAC 621908 31 100.0 35 ............................... TTGATTATCTCCACAGCTTGGGCGTTCTGAATCTG 621842 31 100.0 36 ............................... TGACGGTGTCGGCACCTTGCGGTGGCGGCTGTCACG 621775 31 100.0 34 ............................... CAGATAGCCGCCTCCTCCCATCCCTCCCATGGGG 621710 31 100.0 36 ............................... GACGATACCGCGCCGGCGCCGGTCAATTTCACTGCC 621643 31 100.0 34 ............................... CTCGCCAATGTCGCGCAACACGGCGTCGTCAAGG 621578 31 100.0 34 ............................... ATTTCGGCGGCGAAAAACTGGAACTGCCACGCGC 621513 31 100.0 34 ............................... GCCGTCCGTGCCGGCCGATAGCTGTACGGTCACA 621448 31 100.0 35 ............................... CCTTTCCATCGACCAGCACGCCATACACCGAGACG 621382 31 100.0 34 ............................... ATCCCTAGCCACGCCGCATCCAGCGCGCGCAGGC 621317 31 100.0 34 ............................... CAGAACCTTTGGTCGCCAGCCTCAAAGGCCGCGT 621252 31 100.0 35 ............................... GCCGTCGGCTTGTCGGACCCAAGCGGATTTTTGAC 621186 31 100.0 33 ............................... CTGGGCTGCAAGGGCGCTGGACCGGTCCCTCTG 621122 31 100.0 35 ............................... CTTTATAAATCGAAAGAGCGCAATTGCCTGCTGGA 621056 31 100.0 36 ............................... CGGCATCACCTTGAAAGACCCACGGTTTGCAAACGT 620989 31 100.0 34 ............................... AAATCCAAGCCGCCGCATGCGCGCGGTGAAGGGG 620924 31 100.0 38 ............................... CGGTAGAATACCCGCCTGGCCTCGCCCCGGCGTTTCAG 620855 31 100.0 35 ............................... CGGAGAAATGCGCCGCGAAACCCAGGAAATTGAAA 620789 31 100.0 36 ............................... CAGTCGTCCAGCGTGCCCCGGCCCGGTCCGCCGCCG 620722 31 100.0 33 ............................... ACAGCACCCGCGCCCTTGCGGGTACCGGGCACG 620658 31 100.0 33 ............................... CTCCCATCCCCCGCGAGGCGACGCGCACCCCAA 620594 31 87.1 0 .......................C.G..C.G | ========== ====== ====== ====== =============================== ======================================= ================== 26 31 99.5 35 GTCGCCCCCACACGGGGGCGTGGATTGAAAC # Left flank : TGCACCTGATTGGGCATCAGGCAATAGGACCAGATCTCCGTCCCGGCCCGCCCGGCCCAGAAGGTCAGCTGGGTCAGATAATCGGCATAATCCTGCTCGGAAAAAAACACCTTCTGCCAGCGGTTGCCCCGCTGGGTGACATAATGCGGGTGCCCCGGCACCACCAGTCGCGCCAACCTTGCCATGACACAATCCTAGCAGGAAAACCATATACTGTCCCCGATTAAATTCGGGGTGGGCCCAAGAGCAGACGTCGGAGCAGACGTCGGAGCAGGCGTCAGGATGCGCAAAGGGCCGGGCACAAGGGCAGGCACAGAGTTGCGCGCGATCCCCAAGCTGTCGGCAAATCCCAGGGGGGTTCGCGCAGGCCGCAACACCGCGCCCAGCCTGCCGTGCGGCCGCGACCACCGGGCACCGCCCGCACAAACCGGTCGCCCTGACACCGGGTTCGCGCTACACTCGATATTTCCCGTTCTTTGACAATGTCTTATAAAACCACA # Right flank : ATCGACATGGCCGATGGGACTGGTGTCGCGGGGGTGCGTGTCCGCTTTTGCACGCGGGTCGCCGCGACACCCCCCGGCCGCCACAATAAAACCGGGGACAGTATCCTGTTTTTCACTCTCTCGCCGAACGATATATCTTATTAAAATATATAGATTATTTCCAACATACCGGCGATTGAAAAATAGGATACTGTCCCTGGATAAAACGGGGCGGTGCGGCGACGGATTTGTCCCCCCCTGTCGTTTTGCTCCTGTGCCTTTTATCCCTCTTGGCTTTTGTCTCCTTCGGCTTTTGTCTCCTTGGGCTTTTTGTGCGTGCGCCGCGCGTTTTCCCGCCCCGGTGGCCGGGCGCGGGGCGGTTGGAAAAGACGTCCGGCTGCTGTAGGTATGGTTGCACCGCCCGCGACGCCACCCCGGTTGAGGACGATTTTGCCCCCATGCCCTATTACGCCCATTCCCTTGACGGCCGGCCGGAAACGGACTGGCACGGCCTGGCGCCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCACACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //