Array 1 28104-29571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPI01000034.1 Pseudomonas aeruginosa strain AZPAE14986 AZPAE14986_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28104 28 100.0 32 ............................ TGGAGATCACCTGTGATGCCTGGCCAGCCCCG 28164 28 100.0 32 ............................ TATATCCGGGCGCTCAGCACCCAGCGATATGG 28224 28 100.0 32 ............................ ATATCCGGAGCGTAGGCGGGGACGGGCAGGGC 28284 28 100.0 32 ............................ GTACCGGCTCGTGCCTCGCCCGGCCCGGCCAC 28344 28 100.0 32 ............................ TCAGCAGCACGCAGCACAGCCTTGGAGCCAGT 28404 28 100.0 32 ............................ AGGTACATCCGCAGGATCAAGGTGACATACTC 28464 28 100.0 32 ............................ GCATGTGCATGCGCCAGGCGGCCACTACGTCA 28524 28 100.0 32 ............................ TTCGCGATGTAGCAGAGGAATGGGACGATGTC 28584 28 100.0 32 ............................ TGGCAGATGGACCCGGTAGCTGCATGCTTACG 28644 28 100.0 32 ............................ TTTGAGAAGCGACCGCTGGTGTCGATCAGCTT 28704 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 28764 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 28824 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 28884 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 28944 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 29004 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 29064 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 29124 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 29184 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 29244 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 29304 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 29364 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 29424 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 29484 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 29544 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTGTAGGCAGCTAAGAAATCGTAGTGGCCCCACGTCGGCGGTAGCTCGCCGTTCACTGCCGAGTAGGCAGCTAAGAAACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 38922-38294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPI01000034.1 Pseudomonas aeruginosa strain AZPAE14986 AZPAE14986_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38921 28 100.0 32 ............................ TAAATGGGGTAATCGTTTTACTTGACGGGTTT 38861 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 38801 28 100.0 32 ............................ ATGCGTGATTTCACCTCGCCATCACGTGTGAT 38741 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 38681 28 100.0 32 ............................ GAGTGCCAGCGTCGGATAAGCGCCTGGATCAA 38621 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 38561 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 38501 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 38441 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 38381 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38321 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //