Array 1 1307201-1307440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034835.1 Pseudoalteromonas sp. R3 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 1307201 35 100.0 34 ................................... TGTCTTAAGAACTGCTTATCCTCTTCAGGTGTAT 1307270 35 100.0 32 ................................... CTCTTTTTGGCTTAGAGAGTATCGGCGTTTAA 1307337 35 97.1 34 ...................A............... GCTACCAGCCAGTCGAATTGCGTTATGTCTGTTA 1307406 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 4 35 99.3 34 GTTTGGATACTCCCCGTTTGATAGGGGATTAAGAC # Left flank : ATAAACCTGAATTAAAAAGTACGGAGACATGCTTGGATACTCCCCGTTTGATAGGGGGTTAAGACACTCCGCTATTTAGAACATTACGAAAGACATCGTCTGGTTGGATACTCCCCGTTTGACTATCCAGCTTTTTACACAGTGCTTGCCAACCACTCACCGTCATTCCGCACTTGATGCGAAATCTACCTTCAGACAACGCCGTTTGCGCTAACCTGTGGTTCTCACGAAAACCCCGGGAGGTTAGCGCAAAAGCAGGTTTCTGGCCTTGTGATATATAGGTTGTGGAGCAGACCGCTGCGTTCCCCGCACGAGAGGGGATTGAGACGTTTTTTCGTACAACCAGCTTTCAACGGTCTTCGCTGTGTAGTGGTCAACTAATCCCGGACAGTAAATAAAGTTTTTCTTCCGCAGCAGCTGGCGCGATCATTTCATTGTTGCTGTGTGGCCTTTGCCAGTTGTAGTAGTCCGTTTAATTGATGTTTATCTTACCAATACCA # Right flank : CCGAATGTTTTTACTGTATACCGCAAAAGCTTTATTGTTTGGATACTCCCTTGCTTTTGTGCAACGTGATTACCAACCATTCACAGTCATTCCGCACTCGCTGCGGAATCTACCAACAAGCAACTCGGAAATAGCGTTGTGATTAGACTAGCAGTCGCAACCGAACATCTATTTGCCCGTAAACAGATACCGGATCAAGTCCGGTATGACGGCGGTGTGGGAGTTTGATTCGATGCAGAGGCTTGGCAATTGGTAAGGACTGACAAACTGAATAATACTAGCGACTTATCCACTGTCCGAGTCCACGGCTGGCAAGGCCTCAGAAAGTAAGGGTTTGGATACTCCCCGTTTGATAGGCTGAGAGCCGCCCGGGAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAGGCCTTGGATGGCCGATTCTGGCGAATGCACCACTTACTGCTTCATGGATGAATCAATGTGCACATTATTGACCTACTGGATACTCCCCGTTTGAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATACTCCCCGTTTGATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1308404-1308762 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034835.1 Pseudoalteromonas sp. R3 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1308404 32 100.0 34 ................................ ATTTTCCAGGTGATTGGTATAGGCCTGCTCCAGC 1308470 32 100.0 34 ................................ ATTATCATGTATTGAGAGTAGGAAAGCGTTGGGT 1308536 32 100.0 33 ................................ CATGAGTGGGCGGCGATTATCGAAAAAAAATGG 1308601 32 100.0 33 ................................ CAGGTGCCAGCGCTGGGTAGCCGAATCTCGCAC 1308666 32 96.9 33 .............T.................. GCCTGACGATGTAGTCACCGACAACCGGCGCTT 1308731 32 87.5 0 ..............TT..T........A.... | ========== ====== ====== ====== ================================ ================================== ================== 6 32 97.4 34 GCTGCATTCCCCGCGCGAGAGGGGATTGAGAC # Left flank : GCACATTATTGACCTACTGGATACTCCCCGTTTGATAGGGGATTAAGACTTACTAAACTCAGTATTGAAAGTCCCTGAGACAGGTGGTTTGGATGCTCCCCGTTTGATAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAGGCCTTGGATGGCCGAACAGGTTAGCGCTTCATGGACGAATTACCTGCACATTACAGACCTATTGGATACTTCCCTCGTGACTATCCAGTTTTGTGCACAGTGATGATCAACCACTCACCGTCATTCCGCACTTGATGCGGAATCTACCTTCAGACAACGCCGTTTGCGCTAACCTGTGGTTCTCACGAAAACCCCGGGAGGTTAGCGCTCGTGTAAGCTTATGTTTATTATGATATTGTGTAACTTTGATATGCAGATTGCGTCTGCTTTGGTCAAATTTGACCGAGGTTAGCGCAAAAGCAGGTTTCTGGCCTTGTGATATATGGGCTGAGGAGCAGGCC # Right flank : CCGAATGTTTTTACTGTATACAGCAAAAGCTTTATTGTTTGGATACTCCATGCTTTTGGATCGTGATTACCAACCATTCACAGTCATTCCGCACTCGCTGCGGAATTTACCAGCAAGCAACTCGGAAATAGCGTTGTGATTGGACTGGCTGTCTCAACCGAACATTCTATTTGCCTGTAAGTAGATACCGGATCAGGTCTGGTATGACAGAGGCGGAGTATTTGGTTTTGTGCTGAGGTTTGGCAATTGATAATGATTGACAAACTGAATAATACTTACTACTTATCCACCGTCCGAGCCCACGGCTGGCAAGAACTCTGAAAGCAAGGGTTTGGATGCTCCCCGTTTGATAGGGGATTAAGACTTTAAACAACAGAACTAAAAGAAAAACAAATTCTGGTTGGATGCTCCCTGTTTGATAGGGGATTAAGACACTGAATTTTATCACCGCTATCACAAGTTTTTTTGTTGGATGCTCCTCGTTTGATAGGCTGAGAGCC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCATTCCCCGCGCGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1313707-1313940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034835.1 Pseudoalteromonas sp. R3 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1313707 32 100.0 34 ................................ CCACAATATAATCGCCAATATATAACCGATAGTG 1313773 32 100.0 33 ................................ ATGACGTCATCGTTTTTTGTGATAGGTATGCCG 1313838 32 100.0 39 ................................ CCCACTCTTCTGCAGTTAAACTATGCCACTACATTGACC 1313909 32 71.9 0 A..A.AC......TTT..T........A.... | ========== ====== ====== ====== ================================ ======================================= ================== 4 32 93.0 36 GCTGCGTTCCCCGCACGAGAGGGGATTGAGAC # Left flank : CCTGGCTTTTCCGTGCCGCTGGCATTTGCTTCGTCCTTATCCTTGGATCAGATGAAAAGCATAGGCGAGGGGAGTATGACAGACAAGTTTTTGGTTGGGTGTCTGTCATTTCGCTTTTGATTGAAACCATTCTTGTTAGCCATGTATGGTTTGGATACTCCCCGTTTGATAGGGGATTAAGACGATAAGGCAATAAGCGTATCATGTGTTTGGCGAAGGTTTAGATACACCCCGTTTGACTATCCAGCTTTTTACACAGTGCTTGCTAACCACTCACCGTCATTCCGCACTTGATGCGGAATCTACCTTCAGACAACTCCATTTGCGCTAACCTGTGGTTCTCACTAAAACCCCGGGAGGTTAGCGCTCATGTAAGCTCATGGTTATTATCATATTGTGTAATTTTGATATGCAGAATGCGTCTGCTTTGGTCAAAATTGACCGAGGTTAGCGCAAAAGCAGGTTTCTGGCCTTGTGACATGTTGGCTGAGGAGCAGACC # Right flank : CTTATTAGGTAGCTTGGTGTTGAAGCCTTTTTCGAAGTTTGGATACTCCCCGGTTGATAGGGGATTAAGACTGATCTTATCCAGCTCTTCTATGTAAGCTATTAATGTTTGGATGCTCCCCGTTTGATAGGGTGAACGCCGCTCGGAAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAAGCACTGGATGGGCGAACTGGTTATAGCTTCATGGATGAATTACCTGCACACTATCAAACTGTTTAACTGCATTCCCCGCCCGAGAGGGGATTAAGACCTCTTTTCTTGGTTTTACCAATTGACTTTCTTTCGTTTGGACGCTCCCCGGTTGATAGGGGATTAAGACAAGAAGCCAAAGAGACTGCGGTTGTTACCTACAGTTTGATATTCCCGGGTGTAAGCGCGAGGCAATGGACGCCGATTCTGGCGAACGAGCCACTTGGCGCTTCATGGACGAATCAATGTGCACATTGTTGAACTATTGGACATTCCCCGTTTGAT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGTTCCCCGCACGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1315095-1315749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034835.1 Pseudoalteromonas sp. R3 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 1315095 35 100.0 35 ................................... AATGTTCTACTCCACCGAACCAAGCAATAATTATT 1315165 35 100.0 33 ................................... ACGGTACCACGCTTCAAGTCCACATCGAGTCCC 1315233 35 100.0 34 ................................... CTTCAGCGGCTCGCCGCATGAATTCCAGTAAGCC 1315302 35 100.0 35 ................................... AGATGCTATTTGTTTTTGAGGCATTTCGTGCACTT 1315372 35 100.0 34 ................................... TAAGCTTTGTTTAAATGCTTACCAACTGCTCTCT 1315441 35 100.0 34 ................................... ATTTCCACTAGTGTCTACCCCAAAGCCATCCTCT 1315510 35 97.1 35 ......G............................ AAAAAAGGTTAGAGCTATGGTGCTTGAACTTTTCA 1315580 34 97.1 32 .......................-........... TTCATTATCAGGCTCCCAACACGATAATAACC 1315646 35 97.1 34 ...........................G....... CGATGAATGCACTCCAGGTCATACCAAATGCAGT 1315715 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================== ================== 10 35 99.1 34 GGTTGGATGCTCCCCGTTTGATAGGGGATTAAGAC # Left flank : TAGCGCTTCATGGGCGAATCAAAGTGCACATCGCTGACCTATCGGATATTTGCTACCACCGTTAAGCCATTAACTGAATAACTCAAGCAGGGTAAAAAGTTATCTACAGAATTAATAATCAAATCTGATTACTCGGCATCAGCTCATAAACCTGACAAATGTTTATGTATCTGAAGTGGGTAAGTCATTACGGATATCCACAAATCAATCGTTCCAAAGGATAGTGGAAAGAATAAGCTGTAGATTGTCATCATTATTTTTTATCAATTTCAATTGGATAGTTAGAAAAGTGGATAAGAATATGACGAACTCATCGGTACTGACAGGGTTGGTTTTTTGGGCAATAATGCAACTTATTGAAAGTTAATTATAAATATATTATTGATGTAAGTAATCTCGCAATTTTTTTGTAAGATATTGACACTTACTGACAAACTGAACAATACTAGTGACTTATCCACCGCCCGAGCCCACGGCTGGCAAGGCCTCTGGAAGTAAGG # Right flank : CCGAATGTTTTTACTGTATACAGCAAAAGCTTTATTGTTTGGATACTCCCTGCTTGTGGATCGTGATTACCAACCATTCACAGTCATTCCGCACTCGCTGCGGAGTCTACAAGCAAGCAACTCGGAAATAGTTTTGTGATTAGACTGGCAGTCTCAACCGAACATCTCTTTGCCTGTAAGCAGATACCGGATCAAGTCCGGCATGACAGAGGAGGGGTATTTGGTTCAGTGCGAAGGTTTGGCAATTGGTACTAACTGACAAACTGAACAATACTAGTGACTTACCCACCGCCCGAGCCCACGGCTGGCAAGGCCTCTGAAAGTAAGGGTTTGGATACTCCCCGTTTGATGGGGGATTAAGACTTATCGGTAGGTTTCTCCGGGGCGGGACTTCTTTGTTTGGATACTCCCCGTTTAATGGGGATTAAGACAATTGGTTTAGCTGCTGAAACTTCTGGCTCTGTGTGTGGACGCTCCCCGATAGGCTGAGAGCCGCCCGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGGATGCTCCCCGTTTGATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //