Array 1 26406-26011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHNV01000006.1 Escherichia coli O119:H4 str. 03-3458 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26405 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC 26344 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 26283 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG 26222 29 93.1 32 .........G..C................ CTAGGATAAATTAAAAGACAAAATTGCAGCAA 26161 29 93.1 32 .........G..G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 26100 29 93.1 32 .........G..C................ ATCGATATGTACGTTAGCGAGGGGATCACGCA 26039 29 86.2 0 .........G.AC...............A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTGTTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 215-1341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHNV01000016.1 Escherichia coli O119:H4 str. 03-3458 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 276 29 100.0 32 ............................. GGTGGCGAGCTGACGGAGTTGGTCTACCGGTC 337 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 398 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 459 29 100.0 32 ............................. CTTTTCATCAATCGGAGCATATTTGCGATCGA 520 29 100.0 32 ............................. CGGACGGTGGGAATATAGAAAATCCGTCCACC 581 29 100.0 32 ............................. CAATAACGCAGCATCCAGGAAGCTGTTTCCGC 642 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 703 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT 764 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 825 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA 886 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 947 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 1008 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 1069 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 1130 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 1191 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 1252 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1313 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTTGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCTTAGTG # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //