Array 1 17968-26870 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBFI01000032.1 Rathayibacter toxicus strain FH142 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 17968 29 100.0 32 ............................. GTTCCCTCCTGGCCCTCCGGCTAGGCCGTGGT 18029 29 96.6 33 ............................T GAAATTCGTGGTCGTAGAAAAGTCAAGTCCTCA 18091 29 96.6 35 ............................A ATGTACGAGTCGTCCGCCAAGGTTAAACCATGGGA 18155 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 18216 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 18278 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 18340 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 18401 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 18463 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 18524 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 18585 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 18646 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 18708 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 18769 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 18830 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 18891 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 18952 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 19013 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 19074 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 19135 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 19196 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 19258 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 19319 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 19381 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 19442 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 19503 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 19564 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 19625 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 19686 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 19747 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 19808 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 19869 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 19931 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 19992 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 20053 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 20114 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 20175 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 20236 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 20298 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 20359 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 20420 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 20481 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 20542 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 20604 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 20665 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 20726 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 20787 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 20848 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 20909 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 20971 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 21032 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 21094 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 21155 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 21216 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 21277 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 21338 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 21399 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 21460 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 21521 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 21582 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 21644 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 21705 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 21766 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 21828 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 21890 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 21951 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 22012 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 22073 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 22135 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 22196 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 22257 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 22318 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 22379 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 22440 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 22501 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 22562 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 22623 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 22684 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 22745 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 22806 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 22867 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 22929 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 22990 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 23051 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 23112 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 23173 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 23234 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 23295 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 23356 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 23417 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 23478 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 23539 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 23600 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 23661 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 23723 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 23785 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 23846 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 23908 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 23969 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 24030 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 24091 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 24152 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 24213 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 24274 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 24335 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 24396 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 24457 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 24518 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 24579 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 24640 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 24701 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 24762 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 24823 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 24884 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 24945 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 25006 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 25067 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 25128 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 25190 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 25251 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 25312 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 25374 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 25435 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 25496 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 25557 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 25618 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 25680 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 25741 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 25803 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 25864 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 25926 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 25987 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 26048 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 26109 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 26170 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 26231 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 26292 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 26353 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 26414 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 26475 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 26537 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 26598 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 26659 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 26720 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 26781 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 26842 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= =================================== ================== 146 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //