Array 1 245680-246866 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKE01000002.1 Salmonella sp. S113-49063 NODE_2_length_372731_cov_142.099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 245680 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 245741 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 245802 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 245863 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 245924 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 245985 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 246046 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 246107 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 246168 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 246229 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 246290 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 246351 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 246412 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 246473 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 246534 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 246595 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 246656 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 246717 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 246778 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 246839 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 263037-264777 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKE01000002.1 Salmonella sp. S113-49063 NODE_2_length_372731_cov_142.099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 263037 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 263098 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 263159 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 263220 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 263281 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 263342 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 263403 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 263464 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 263525 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 263586 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 263647 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 263708 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 263770 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 263832 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 263893 29 96.6 32 ............T................ TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 263954 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 264015 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 264076 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 264137 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 264198 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 264259 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 264320 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 264382 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 264443 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 264504 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 264565 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 264626 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 264687 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 264748 29 93.1 0 A..............A............. | A [264774] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //