Array 1 54314-51307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMZN010000005.1 Bifidobacterium bifidum strain D52t1_170925_G6 NODE_5_length_122833_cov_26.7768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 54313 36 100.0 30 .................................... TTATTTTACGGTAAACGTGCAAGTCGCCGT 54247 36 100.0 30 .................................... GAGTGAGACGGAAACCATCGCAAGGAATCT 54181 36 100.0 30 .................................... TTCGACGACCCATCCAACGACCGTCACGAC 54115 36 100.0 30 .................................... CATCGGCTGGAACTACTGGCGCTCGCGGCA 54049 36 100.0 30 .................................... TTTCCACCATGTCATATCTCAAATATCCTA 53983 36 100.0 31 .................................... TGAAGCGACTGCTAAGACGTTGCTTAAGGCA 53916 36 100.0 30 .................................... TGTATGCGTCGCGTAGGTCTGCCACTGAAC 53850 36 100.0 30 .................................... TAGGCATCGAGGCGGACGATCAGAAGCTAG 53784 36 100.0 30 .................................... GGGTGTCAGCCCAACCAACGGCGCATGTCC 53718 36 100.0 30 .................................... CGGATGGCACTTCGACGTAAACAACTCCAA 53652 36 100.0 30 .................................... CGACATGACGCAAAAAATATTAAATGCTTA 53586 36 100.0 30 .................................... GTCCTCAACCTCAAATATTCCGATATGATC 53520 36 100.0 30 .................................... TCTTGGTCAGTACTCGACTCCCGAGCATGT 53454 36 100.0 30 .................................... CCTTGAGCATATCAACGACCGTGGCGACGG 53388 36 100.0 30 .................................... AAAGCTGGACAAAGTGTTGCGGTAAGCCTT 53322 36 100.0 30 .................................... CCAATTTCTGTACGGTGTTGTATAAATTTT 53256 36 100.0 30 .................................... CGTATTGGTGCGTATCGTCGTTTCCGTCGC 53190 36 100.0 30 .................................... CGAGCAATTCCCCCAATGTGATCGTTGTGA 53124 36 100.0 30 .................................... ACGTCGCTTGTGCTACACTCTGATCTTCGA 53058 36 100.0 30 .................................... CGCAGTGAACATCTCTACATGATCCCATGC 52992 36 100.0 30 .................................... CCTTGATATCCCGATTGTTGGCATCGATCG 52926 36 100.0 30 .................................... AGCGTGTCGCCAGATCGTACGACGTACGTG 52860 36 100.0 30 .................................... ATTTATCGCCGCCGGTCAAACCGGTGGTCT 52794 36 100.0 30 .................................... CGTGCAACGTGCGATCAACACGATACGTAA 52728 36 100.0 30 .................................... CATACAAGCGCGATTCATCGAACACGATTA 52662 36 100.0 30 .................................... GTCGCATGGTGTTGTTGATCGCGTTTTCGA 52596 36 100.0 30 .................................... GTTTGGGGGATTGAGCGAGGGAGAGATGGC 52530 36 100.0 30 .................................... CGTAATGCAGATGTTAACCTTATAATAGGT 52464 36 100.0 30 .................................... AGCCGTCATCGTCACTAGGCCAAAAATCCG 52398 36 100.0 30 .................................... AATTCCATCAACAAGTGAAGATACATATCG 52332 36 100.0 30 .................................... AGGAGATCACTTGGTTTAATGCAAGTGAGA 52266 36 100.0 30 .................................... CATACTGGCGTACGATAACAATTTCAACAA 52200 36 100.0 30 .................................... AAAAAATCCTCGATAGTATACACGTCGGCG 52134 36 100.0 30 .................................... CAACAATCTCAACGGCATGGCCAGCATTGT 52068 36 100.0 30 .................................... TTTGACGCACCGCTAACAATTTCGGACTGT 52002 36 100.0 30 .................................... AAGTCGGTGATCGCCGCCGCTGGGGTGAGT 51936 36 100.0 30 .................................... TCTATGTATAATAGATGTGTGAACACGACA 51870 36 100.0 30 .................................... CGACACGGAGATTTTGGAGCTCTGCCCCGA 51804 36 100.0 30 .................................... CATCTTCCTGGATGGTCGCTTGGCGTTGCA 51738 36 100.0 30 .................................... CACCGCTCTTGTATTTGGCGGTGTTGATCG 51672 36 100.0 30 .................................... CGCCCCTGATCGTGCCCGTATAGATCACGT 51606 36 100.0 30 .................................... GCATGTCCGATATGGCGTGTTGTGTCTGCA 51540 36 100.0 30 .................................... TTGTCGCATCCGTTTCATTGCGGTACATTT 51474 36 100.0 30 .................................... TGCGCAGATCGTCGTAACCAAAGCAACCGA 51408 36 100.0 30 .................................... CTGAGATTGGTTTTCTGGGCTCCGATGATT 51342 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.9 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : GTGATGCGCAATAGTGTTAGGGGCACCTCTGTTGCTGTCTTCTGGATAGCTTCCGGGGTGTGCTTTTGATTCTGGTGACATATGGGAAACGATTGATGCACAATATTCGGACTGTTATAGTGACATCCTATGTGAAGAGCGCTGTCGTTGGCGGCCTCAGGCCGATGCCCAAGGAATAAGTGGAGCGCATACCGCAAATGACCAGCCATCAGGAAGTCCCTGATGGCTTTTTTCATGCTTCAAGGTGTGTAAGCCTGTTTGACAGTGTCTGTTGTGGCTTGATTTTTCCGTTCAGTGGAGGTTTTGGGAGGTAGTGCCCGAAAGGTTGCGCACTTTGGATCATGCCCGCCCATGGCGCGATGACCGGTTCGCTTCCTGCAGATTGTCACCGAGCCGGGACATGTCGAGGTAACGCCGGTTGGACCATTCGTTCGCGGTGACGTACCTGATGCGCGCACAGACGAGCATGAGCGCGCCGTTCCCGTCCGGGAAGCTTCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //