Array 1 22782-21532 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXN01000058.1 Escherichia coli strain IH8c NODE_58_length_31742_cov_12.964321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22781 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 22720 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 22658 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 22597 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 22536 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 22475 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 22414 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 22353 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 22292 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 22231 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 22170 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 22109 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 22048 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 21987 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 21926 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 21865 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 21804 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 21743 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 21682 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 21621 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 21560 28 72.4 0 .AA........C..T....T-.G.....C | C [21535] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77620-78258 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXN01000017.1 Escherichia coli strain IH8c NODE_17_length_79248_cov_14.026554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77620 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 77681 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 77742 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 77803 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 77864 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 77925 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 77986 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 78047 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 78108 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 78169 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 78230 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //