Array 1 1244-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVK010000032.1 Campylobacter concisus isolate 2012-191940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1243 30 100.0 36 .............................. AACACAACGAGTGAGCCGGTAACGGTAGCGCCGACC 1177 30 100.0 35 .............................. GCTCCCTCCCACATATCACTAGCAGTTTGCCCTAT 1112 30 100.0 38 .............................. GCAGCAAATTTCGCAACGAATAAAGAGAAGCTTAATGA 1044 30 100.0 36 .............................. TCGTGAGCGCCTGCCTTTAAAAAGTGAGTTAATTTT 978 30 100.0 35 .............................. AGCACCAAATACGCCAACGTAAGTTTTAAAGACGT 913 30 100.0 37 .............................. AGAAAAGAGTATTTAAATCAAGTCCTAGCTGATGGCG 846 30 100.0 37 .............................. TTTGATTTAACTCTATATTTAAACCTGCTAAAGTCAA 779 30 100.0 34 .............................. TGATGTTTATAGTGTTTCAAATAATCCTAATCAT 715 30 100.0 35 .............................. GTACGATACGAAACTGAGCATCGCTTTGCAAAAAT 650 30 100.0 36 .............................. TTTTGAGGACTTAATGGACTACGAGGCGAGCGAATT 584 30 100.0 36 .............................. CTAGATTTTCTAAGCTATCGGTTATTTTTTGCCCCA 518 30 100.0 35 .............................. AAACATATCATGTCCATGCTCTCGTCATCTTTTGC 453 30 100.0 34 .............................. AATTTACCTGTATCACTTTTTAAACCTTCATAAT 389 30 100.0 36 .............................. ATTTTAAAAGAGTAAAAGCAGCCCAAGAAGAAAAAA 323 30 100.0 36 .............................. TAGCCCATGATCTAAGCATCTATGCAAAATCATAGA 257 30 100.0 36 .............................. TGAGCTAAAAGAGTGCGAGCCGATAGATGGTATCGA 191 30 100.0 36 .............................. AACACAACGAGTGAGCCGGTAACGGTAGCGCCGACC 125 30 100.0 35 .............................. GCTCCCTCCCACATATCACTAGCAGTTTGCCCTAT 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : ATGGTATCG # Right flank : CGCAGCAAATTTCGCAACGAATAAAGAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 3649-2439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVK010000014.1 Campylobacter concisus isolate 2012-191940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================================== ================== 3648 33 100.0 44 ................................. ACTGCATTGCCGTTAGAGGCATATCTAAGTTCCACATCTCATCT TCGA [3625] 3567 33 100.0 44 ................................. TCAACTTGGTACTCTCCTTTACCGCTGCATGTTGTCTTACATTA 3490 33 100.0 41 ................................. CCAACGATACTAAATGCGACTTTTACAAATTCAATTAATTA 3416 33 93.9 44 ................G....T........... CATTACACTCCTTTCAAAAAATAAAAATATACTAATTGTAATCT 3339 33 97.0 54 ......................A.......... TCTAAAAAGTCAAAGCTAGAATAGGCATTTAGTCTTAGGATTTGATCTGGATCC 3252 33 97.0 47 ........A........................ AATCCTAGAATATGTCCTAGGATAAAAAAAGCGTTCCTGCAAAATTA 3172 33 100.0 49 ................................. TTGTATGAAAATCCAATATCAATGCCTAATTCCATAGTTTTATTTATCC 3090 33 97.0 47 ..........C...................... TTTGGATAAATTTTTTCAATGCAACTATTATCATTACTTTGAAATTA 3010 33 100.0 45 ................................. CTTGAGTTGGGTGAGCATGAACATCTCCACTAAAAGCTAAAATTA 2932 33 100.0 43 ................................. TACTGATGAGAAAATCTCACGTCTATATCCATCTATACAATTA 2856 33 100.0 44 ................................. GTTTTAACCTTACTAAGACTTGAACAAATAATTTCGACATATCT 2779 33 100.0 43 ................................. AAACCTGCATTTTCCATGGAATGCTCCTTATAAATTTTGATCT 2703 33 100.0 43 ................................. ACAACTCGCAGGAGGCTCACTCTGTCAAGCTTTGCTTTGATCC 2627 33 100.0 47 ................................. ACGAGAAAAAAATCTCACAGTGGAACCTGGTAACAATGCTGTTATCT 2547 33 100.0 43 ................................. TTCTCCATAGTAGGTACATCGCATGCATAGAAATATGAAATCT 2471 33 93.9 0 ..........C.....................T | ========== ====== ====== ====== ================================= ====================================================== ================== 16 33 98.7 45 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCTGATGATTTTGTTCTATTTTTTAGCTCACGTGAGGCATGCGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGCAACCATAAATTTATCCCTAAACGAAGCCAAAACATCTTTACACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATTTTAGCAAAACTCACAGCCTCGTCTAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTATAAGCGTTTTTTGGGCTATTA # Right flank : AGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGATACATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCATGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAACGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGTGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 137073-141265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVK010000006.1 Campylobacter concisus isolate 2012-191940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 137073 30 100.0 38 .............................. TAAAGGTAATATTGTTACTCCTGATAATAGCGTTATCG 137141 30 100.0 36 .............................. ATGCATTAATCATATGCTGTAAGGTTTCAAATTCAA 137207 30 100.0 36 .............................. GAAATAAGTGGGATGAATTTTGCGAAATTATGCAAA 137273 30 100.0 37 .............................. AGTGTTGGCAGAGTTCAAACTCCTATCTTAGGTCTTA 137340 30 100.0 35 .............................. AAGTAAATTATGAAAATTTAATATCAGTAGTAAAA 137405 30 100.0 34 .............................. CCGATTTAGAAAAAAAGGCTAAGAGTTCTTACGC 137469 30 100.0 37 .............................. ACTGGGGTTTTATTGCGAATGTAGATACACAAACATA 137536 30 100.0 35 .............................. ATCCAAATAGAAAAGAATTTTATATTTGGGGAAAA 137601 30 100.0 36 .............................. CGTCGGATGCGGTGAAAACGCTTCAGATATAACAAA 137667 30 100.0 38 .............................. AAATCAATAGCAGAAGAAGCACCACCAACAACAACACC 137735 30 100.0 38 .............................. GTATCAAGATCACATCTTTGATAAATTTTACGAACACT 137803 30 100.0 34 .............................. ATAGTTCTTGATGAAGCTTACAACACCTTTACGA 137867 30 100.0 35 .............................. ACATCCTCAACAACGTAGTTTTTAAGATCAATTCG 137932 30 100.0 35 .............................. ACTAATAGTTCGTATTGTGAATTAATGTTTCATAG 137997 30 100.0 34 .............................. TTGCACCGATGAAAAATATTTTGATACTAAATTT 138061 30 100.0 38 .............................. ATGCTGGTTTGAAAGCCATTAAGCTCACCGTTTTTCTC 138129 30 100.0 36 .............................. TCATCGCCCTTGCCTTCTTCGCCTTTGCCGTCTTGC 138195 30 100.0 35 .............................. AGCGTCGTTCTGATGAAGACCCAAATAAAGATAAA 138260 30 100.0 35 .............................. TATCCTCTTTTAGCGCCAGCAGATTATAAAGATCG 138325 30 100.0 35 .............................. TTGTAAATTTTATTGAATTCCTGGTAAAAAAAATT 138390 30 100.0 37 .............................. CCATATTCAAAGCCCAAATCATCAAGCACATACTTTT 138457 30 100.0 34 .............................. ATGATTATGCTCTAAGTCAAGGACTTTGTCCTAT 138521 30 100.0 35 .............................. AGCTTTTTAGTTCTCGTTTTACTCCGCAAGATAAA 138586 30 100.0 36 .............................. TGAGCTAAAAGAGTGCGAGCCGATAGATGGTATCGA 138652 30 100.0 36 .............................. AACACAACGAGTGAGCCGGTAACGGTAGCGCCGACC 138718 30 100.0 35 .............................. GCTCCCTCCCACATATCACTAGCAGTTTGCCCTAT 138783 30 100.0 38 .............................. GCAGCAAATTTCGCAACGAATAAAGAGAAGCTTAATGA 138851 30 100.0 37 .............................. AGAAATGCGATGAATAGAACGCTCACAAAAGTATCAA 138918 30 100.0 37 .............................. AGAAATGCGATGAATAGAACGCTCACAAAAGTATCAA 138985 30 100.0 37 .............................. TATGGCTTTAAATTTGGTGCGTCTATTAGCTCGCTTG 139052 30 100.0 35 .............................. ATATAGTATCCATAGGGCTTTTTACGCTTTTTGCA 139117 30 100.0 37 .............................. ATCGATAATGCGATCGATGATGTTTTGGATAACCTCA 139184 30 100.0 36 .............................. TCCTAGAGCTATATTTGGATGTAGATGCAAAACTTG 139250 30 100.0 37 .............................. AGGATAAAAGGCAACCTAACCACAACTGGCAACATAA 139317 30 100.0 38 .............................. ATGATGAAATATCTCATTGATATAGAAAACTCTATCAA 139385 30 100.0 36 .............................. TTGAAATAACAGAACCTTCGTGTTGTCTCCAAACTA 139451 30 100.0 36 .............................. AAATGTCTTGAATAACCTCGTTTGAAGGACCATTGC 139517 30 100.0 35 .............................. CTAGAAAATGTAATCGAGCAGAAAAAGAGCATTGA 139582 30 96.7 37 .............A................ AAGTTTGGGAGAACGAGCAAAAGCTGCGTGAGGCTCA 139649 30 100.0 34 .............................. TAAGCCTTTTGTAAAGCCTATTAGCACGGTTGAT 139713 30 100.0 39 .............................. AAATGGTATTTCATCGGTGCCGTCTATCTCGTCGCTATC 139782 30 100.0 37 .............................. GCCCATGATCGTTTGCCATATTTGCGATAGCACTAGC 139849 30 100.0 36 .............................. ACACAGATTTTTGATAGCGGATTATTGAGCTTTGAG 139915 30 96.7 35 ....A......................... AAACTCATTGCAAATCAAAAATCTATCTACAAAGC 139980 30 96.7 37 ....A......................... TTAATACCGCTAAGAACTAGAACGTCGCCACGCTTTA 140047 30 96.7 35 ....A......................... ATAAAAGTTTGTGATTGTTTATAAGCAGTGGCGGA 140112 30 96.7 37 ....A......................... ATGATTGAAGTAACAAGCCGTAAGATAGGCACTTTTA 140179 30 96.7 36 ....A......................... CCAAGATGTAAAGTATTAAGTGGCGATATAAAGGAT 140245 30 96.7 36 ....A......................... TCTTTTTTGTAAAGATACAAATTCTTTGCTTCGAGC 140311 30 96.7 37 ....A......................... TATAATCTAAAAGAAGCAAAGACTTCATAACGAAATT 140378 30 96.7 38 ....A......................... GGATCAGGCAAGCACTCTTCAACAATTTTATCCCTTAA 140446 30 96.7 35 ....A......................... TAGCATTTCAAATGATCCTAATCAACCTTTTTTGA 140511 30 96.7 36 ....A......................... TTTGAAGGGTTGCCACTCTCTCCGCTAGAGTTGTTT 140577 30 96.7 36 ....A......................... ACGACGTAGACACGCTAGCGGCGTTTTGTAAAGAAA 140643 30 96.7 35 ....A......................... TAACTCTGAATACTCAAGCATTAATGAAGACCTTT 140708 30 96.7 38 ....A......................... AAATGCTTAATATGCAGATGGTAAAAAGAGACGTAAAA 140776 30 96.7 36 ....A......................... GATTTTAGGCTACACGACTACTCGGACGGCTTCTTT 140842 30 96.7 37 ....A......................... ATGCGCCTTGCTACATAATAAGCAACAGCGGGGAACT 140909 30 96.7 36 ....A......................... ATAGAAAAACAAATATTGCAGTGACCGAAAATAAAA 140975 30 96.7 34 ....A......................... TAAAATCTGTCCTTGAGCCATTAATAAATACTAG 141039 30 96.7 37 ....A......................... TCGATCTAATCGCTTTTCTACACGGTAAAACATATCA 141106 30 96.7 35 ....A......................... TTTTGGTACTCGTCAATAGACGTAAAGCCACCTAT 141171 30 96.7 35 ....A......................... ATACAATTTATTAATATACCTGATAATTCAGTATT 141236 30 96.7 0 ....A......................... | ========== ====== ====== ====== ============================== ======================================= ================== 64 30 98.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCACCTTTGTGAGACGCTCACAGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAGGCAAATAGGCTTAAAAAGTGCATCTGCGAGGACGTGCCTTATGAAGGATTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTTGCGTATTTATATGTAGTTAAAATTTAGTCAAATTTAAGGCGAATAAATATAGACTTCTTGCACCAAAAGGTCTATAATATCAGCTTTTTGGTGCT # Right flank : CATGATGAAATATCTCATTGATATAGAAAACTCTATCAAATTAGAATTTACTCCGTTGGAGTTTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 64-689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVK010000010.1 Campylobacter concisus isolate 2012-191940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 64 30 100.0 36 .............................. TTGAAATAACAGAACCTTCGTGTTGTCTCCAAACTA 130 30 100.0 36 .............................. AAATGTCTTGAATAACCTCGTTTGAAGGACCATTGC 196 30 100.0 36 .............................. GGTATGAAAGAGAGTAAAGAGGTATTAGAGGCTGAA 262 30 96.7 38 ...........................G.. AAATCTGGATCGAGCATAGCATTACGCATTGCATCAAA 330 30 100.0 36 .............................. TATACCAAAACATGCAAGCGATTAAGCCACCGACCA 396 30 100.0 35 .............................. CCTGCCAAATAAAAGGCGTCGCCAACGCTAAAGCC 461 30 100.0 35 .............................. TATGCTTCTAACAGCCTTTCTCTCTCAGCGCTTTT 526 30 100.0 37 .............................. TATCCAAAGCCCCTTTGAATACTGAGCCATCCCTTGC 593 30 100.0 37 .............................. CCTGAAAGCGTGTAGACTGGCACATTTATGTTTTTAG 660 30 90.0 0 ..............T..........T...T | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AATTTACTCCGTTGGAGTTTGAAACATGATGAAATATCTCATTGATATAGAAAACTCTATCAAA # Right flank : TCTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGATATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAACAATACTTCAAAAGTGAAGTGTCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 188979-187890 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVK010000008.1 Campylobacter concisus isolate 2012-191940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 188978 37 100.0 38 ..................................... AGCACTAAAGCTCCCGAAAATTTTGTACACTTCGTCTG 188903 37 100.0 38 ..................................... GAAAACCAAGTTTTTTTAAGAAGAGGTTCAAATTCTGG 188828 37 100.0 38 ..................................... GAGATTCCTTATCTGTACCCTTTGCGTGGACTTGGGTA 188753 37 100.0 38 ..................................... GATAGAAGAACCTGAGTATGGAGTGAACTCAAAAACGC 188678 37 100.0 35 ..................................... TGTTTTTGATCATTACTCTTGAAAGCTATGACATA 188606 37 100.0 38 ..................................... TCTTCTGGTTTAGCGTCTGGGTGCTCTGAAAACCCATT 188531 37 100.0 39 ..................................... CGTTGTCGTCGTCACCGAGGAAGTTGAGTTTAAACTCTT 188455 37 100.0 39 ..................................... AAAATTGGACTGCGGCAAAAACTGTTGGTTGACAAAAAC 188379 37 100.0 41 ..................................... ATCTATACACCTCTACATCATACACTTTTTGTACTATAAAC 188301 37 100.0 42 ..................................... CATACTCTTTTACCACTGATAGTTGTCATATCGGGGGTATTA 188222 37 100.0 39 ..................................... TACGCCGAATCTGCAATGAAATAAGAGACAAGCTCTTGT 188146 37 100.0 36 ..................................... AACACGGTAATACACTTGCCATGTTAACCTCTTTCT 188073 37 100.0 34 ..................................... TAACCTATCTAGGTGGCAATGTACCATAAAGGTG 188002 37 100.0 38 ..................................... TGAGCATAGTGTCCATCTGGTAGATACCAACTATTAGC 187927 37 94.6 0 ................................A...A | T [187892] ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 99.6 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTATGGCTACTTAAAAAGCTAAATCGTGGCGAAATAATCGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 191937-192194 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVK010000008.1 Campylobacter concisus isolate 2012-191940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================== ================== 191937 31 100.0 50 ............................... TCCGCGCTTTTTGAAGTGATCGGATACACATACGGAAAAAGTGGGTTTCA 192018 31 100.0 39 ............................... AGCAAGAGAAGTTAAACACGCTGACTATTACGAGTTTCA 192088 31 100.0 45 ............................... TTATGTCGGATGGAAACTACTCGACGTGGCAGAGATGAAGTTTCA 192164 31 90.3 0 .......A..A......G............. | ========== ====== ====== ====== =============================== ================================================== ================== 4 31 97.6 45 ATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Left flank : TTGCAGTAGCTTGGAGTGGTTTACCGACTCGAAAAAGTCTTTTACGTCGGCTTTTAGTATCCAGCAGTCATTCTCGTTTATGAAGCTACTGGCTCTGTTTATGGCTTTGTAGGTGGATTTGTGCGGGCGGTAGGCGTAGGAATTTGATAAAAATGTCTCGTCGAAGTATGGATTTAACTCCGAGTATAAAACCCTTTGAACTAACTTATCTTTTATAGAGGATATGCCTATGGGTCTTACGCCATTGCGATTTTCTTTTGGGATGTTGATCTTTCTTAGCGGCTCTGGCGTGTAGGTGCCATTTAATAGTGATCGTATGAGATGATCTGCGTTTTCGTCAAAGTTCTTTTTAAAATCAGCATATGAGATCTCATCTAAACCTAAAGAATTTGCAGAAATTTCGTCAAATGCGGAGCTTAAAGCACCTTTTGTAAATATGTGTTCTAGGTTTTTAGTAAACATTTTAAATTTACCTTTTTAAATGTGGTATGGGTCACTAT # Right flank : AAGATGAGCAAGCTGGAGGACAAACAGAGCCAAAAGCTTCGTTTCAATCCCTTAAATCGGGTCAAATTTAACAATGATAAGTAAAAAGAACCTATCTTAAATATCTTTAAAATCACGAATTTTCGAAATTTTAGCCAAAAAGATAGAAATTTAAATTAAAAATAAGAGCGATAAAGGTATGCACAAATA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //