Array 1 42956-41666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWJ010000014.1 Levilactobacillus brevis strain ASK-1 14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42955 36 100.0 30 .................................... AGCCTACGAGATAGAGAACAGCGATAAGTT 42889 36 100.0 30 .................................... TTCTTCTAGTCCCTGTGGTAAGTCCATTTT 42823 36 100.0 30 .................................... TTCTAAAGCTAAAACAAATATTGCAGACTT 42757 36 100.0 30 .................................... GAGCAACACAAACATGGAATTAGTCGACTA 42691 36 100.0 30 .................................... CCGTTCAGAGCTTACCAAGGCGGCCAGCCA 42625 36 100.0 30 .................................... ATTTTATTTAACCAAGAAACTGACCAAGTA 42559 36 100.0 30 .................................... GCCAGCTGTATTAACTCATCCGGCGTGGCT 42493 36 100.0 30 .................................... TTTGTTGATTGCCGCTTTGGAAGGAATCTC 42427 36 100.0 30 .................................... AAGTTCCAAAGATTTAAGCAGTCAGTTTAA 42361 36 100.0 30 .................................... CAACCCAGTTGATTGGGTGGCCGTCAAGTT 42295 36 100.0 30 .................................... ATGAGCTGGAAGAATATAAGCCACTCGAGA 42229 36 100.0 30 .................................... AATTGTTTTCCAATCTTGATATGCCCATGT 42163 36 100.0 30 .................................... TGGCTGCCTCCATAGATAACGATCGCTGAA 42097 36 100.0 30 .................................... TCCCAAAGGTAAATCATTAAATGATCCCGA 42031 36 100.0 30 .................................... GAATCAAGTAAATGGGAACGCTGTTCCTGT 41965 36 100.0 30 .................................... TCATTGAGGCGTTAATGTATAAACCGCCTT 41899 36 100.0 30 .................................... GCCAAGAAATCAACGACTACATCGAATTTA 41833 36 100.0 30 .................................... ACAATTACCAACAAATGCAACTCCAAGCAT 41767 36 100.0 30 .................................... TTAATGTAAGGCGAACCATCCACGAAGGCA 41701 36 91.7 0 ...........................A.C.....T | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCGTTATTTCAACGAAAACTGCAAACGAGGTTGTTGAAAGTCTTAGCTGATGATCAAACGGTGGGCTTAGTGGATGGGCTGCAATCATTGCTATCTCAACTATTAGCGGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTAGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGGCGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATTTACCAATTCTTCTAATTGAATTTTCATCCACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTGTGGTAAATTCTCAAGGTGAGATAATGGTGTGAAAATGTCG # Right flank : ACCCACTAGCAATGCTGCTAGGTGCTATGGTGTCTTACGATTTTGATAAAATGGCTCATTGATAAGAGCGAGATAACTTCTTTGAAGATATTAAATGACCTTGTAAAAAATGGTCTATAGATCTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCGCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCACGTATCCTTAAATCTGTATCATCTCAATCCAATCAACCAGCGTTTAGCAGTCCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGGCCACCATACCGCGTATGATAGAGACGATAGCTAGAAGTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 42093-41514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWJ010000007.1 Levilactobacillus brevis strain ASK-1 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42092 29 100.0 32 ............................. CTTGCAAGGAGTCAATATCAGCAATTGCTCCA 42031 29 96.6 32 ............................C CATCGCGGTTTGCTCTTAGCATCCTGATAAGG 41970 29 100.0 32 ............................. CAACACTCTGTCGTCAATACTTTGTGAATTCA 41909 29 100.0 32 ............................. AGCAGTTTCAACTTGTCGGAAGATGAATCATT 41848 29 100.0 33 ............................. GTAACTGAATTTGTGCCGGTGTTGTCGCTGTTT 41786 29 100.0 32 ............................. GTCGAAGGCGATGTACGTGAACTGAAAAGTAA 41725 29 100.0 32 ............................. AGATGGCCTTTTTCGGCTTAGCTGCCTTAGTG 41664 29 96.6 32 .............G............... ATTAGTTGGTCGAATAGAAAAAAGCTAGGTAT 41603 29 96.6 32 .............G............... GGCTGAAAACGAGCTTGTAGCATTTGAACCAA 41542 29 82.8 0 ............T....A......G..TC | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTATTCCCCACACATGTGGGGGTGATCCT # Left flank : CGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACAACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATTGTTCTCGGTCAGACACTCCATGATCAGCCAACTGTATTACCATCTGCGACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATTCAGTTTGTCGCGGTGGATTTAAACCAAGTCATTGAATCAGCAGTACCGACTGATCAAGTGGACCTACAATTGATTCAGTAACTGATGAAATAAAGCGTTGTGAGCTGGTTCCGATTATGGGGACCGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCAGATTGCCGTTGCCACGTTTCTGCGGTATGCTATAAAATATAAATGAGTCTCACAACGAAACTCATAAAAAATGGCGGTTTTGAAATTTTGGAATACCGGTTTGGCGGTGTTTCTTTAGT # Right flank : AATACTGGGGATGGCTCTAACACCGGGGGCAACACTGATACCGGTAATGGTTCAAATACCACTGGTGATGACAACAGTTCAAGCATCTCAGTATCAATCAGTTCAAACGATTCTGACGAACAGATCAAGCAAGCTGTCGCAAGTCTTAAAAAGATTGCCGCTCGTTACAGCATTAGCACTACCGCTTTAGATAACGTGGTTGCTAAGGCATCAGATCCAATGTCAGCAACTGACAAGGCAGAAATTGTTGCCGCGTTCAGTAACGTGGTTTCAAAGATTAAAGATATTCAGAACTCAGATCAAAACACTGTTGATCAGAATACTGGTGACAATGCTTCAGATCCTAATCACGCCAATACTGGCTACACAACTAATTTGAGTGGAACGGCAGCGGCTAATAAGCGTCTTTCCGAGAATAAGTTAGTGCCAGTTAAGCCAGATTACGATACTACACCGATTAACCCACACGATAAGAAGTATCTGATTGATACAACTGCTCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACACGTGTGGGGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82747-83202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWJ010000008.1 Levilactobacillus brevis strain ASK-1 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82747 29 100.0 32 ............................. ATCAGTATTTTGACTCATTACCGCATCGGCTA 82808 29 100.0 32 ............................. AACAAACAACCTGATAACAGTTATAACGATCA 82869 29 96.6 32 ............................C GAGATGTGACTGAGTATTCTCCAGATGAAGCC 82930 29 96.6 33 ............................C ACGGCAGAAGATTTCTAAAATCGTTTCAGGCCA 82992 29 100.0 32 ............................. GAACTAAATTTTTGGTTAGGTGCAATATAGTA 83053 29 100.0 32 ............................. ATTGTGCGTCTTTAATAGATTTAAACTTTCCG 83114 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 83175 28 79.3 0 ....A.................-C..TTC | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.6 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CCGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACCACCACAACTTGCAAGGTAATCAGGCTCAAAAGCCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5221-6226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWJ010000018.1 Levilactobacillus brevis strain ASK-1 18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5221 29 100.0 32 ............................. GAAATGTCACTAGCTAATGAACAGGCATTCAC 5282 29 96.6 32 ............................C ATCTCAGATTTGAAAGCTGGCCATTATTTCCC 5343 29 96.6 32 ............................C TAATGACAGTTTAACTGTATTCTTGTAATATT 5404 29 100.0 32 ............................. GTGAGAACTTTTTCAGCGAGGAAGACAACTCA 5465 29 96.6 32 ............................C GTACGTCCGGCCTAACGTTGACCTTACCAATG 5526 29 100.0 32 ............................. GAAATTATGGCACAAAAAAAGAGTCCTGACCT 5587 29 100.0 32 ............................. TTTGCTCGTTACTTTTGTGAGAATTTCTTCGG 5648 29 100.0 32 ............................. TAGCTGGCTTTCATCGACATCCACTGAGTTTC 5709 29 96.6 32 ..................A.......... ATTTTGGGGGAAATGAACGTGTAAAAATTAAA 5770 29 96.6 32 ............................C TGACAGCAATAATGTGTTTGGCACTGGGGTAC 5831 29 100.0 32 ............................. ATATGAGGGAGATATTGTTCACGGTTATGACC G [5853] 5893 29 100.0 32 ............................. AGTCAGCTGCCTTAGTCGTGGCATCGTAGGCA 5954 29 96.6 32 ............................A TCAAGGCCGACTGGCGATCGACCGCATATTGT 6015 29 100.0 32 ............................. GAGTTAATCGCATTCGTTGACCCTTCCACGTG 6076 29 96.6 32 ............................C AAACGCCATGATCGGCCAATCACAGTTGATGA 6137 29 100.0 32 ............................. TTCATCGCAACACGCCGGGATCACCGGCCAAA 6198 29 89.7 0 ...........C..............GA. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : ACCACAAGTGAAGTCCGGTAACGTTTGTCGGTCATATACTGACGGACAAGTTCCATTAAGACGACAGACTTACCAGTACCGGCCGCGCCTTGAATGATGGCAACGGCGGATTCTTGGCCATTGAGACTGTCTTTGATGTAATGATTCATGTCGGTAATAACAGCCTTTTGGTCGTCAGACAAATCGTCGACGAAGAACTGTTCCTGTAAAATTTTATTCATCGAATAACTCCTAAATTTAGTGAATTAGCGTCACTGAGACGTTGGAAATAGCACTATTCATTATAGCAGGTTACGGTGATGGCGCTGAAATTTTTAAGGTGGATTGACTGGAGCGGGAAAGTGGAGAATTTTGGAATCTAGTGACTATAGTTGACCTAAATTATTTAGTCGGTTAAGAGTTTGTGAATTGGGGATAGCTGGAGTATGCTTTAAGAGCAAAGTGATAAAAATGGCCGGATTTTCAAAATAGGAATGCCGGTATATCAAGGATTCTTTAGT # Right flank : TTAATGAAAATTAATGATGATGTTTTTATATAAAAGGTATAAGATTAAATAGTACAAGGCGTGTATACGGTTACATGAAAAGAATCAAGTTTAGCAATTATAAATCAAATGTTAAATAGGGTATGAAATATTTTGTAGGTGTCATTAGTTGATTTAAGCTAGTAAATTCGGTTATCTTAGTAATCATAAGGCGAATACCTAGCATTTAAATCTGTTAGAGAAGGGATGGTTATGTATGGAAGTGTCTAAATCCGTAGCGGCTTTGTGGGCTAAGAAAAGCTCAACCGATACGCAACAGTACTGGCTTCCGCTAATTTCCCATCTAATCGATGCGCGAAACACCATTAACTGGTTATTCAATCATTGGCTCAGTGATGGTCAACGGCAATTATTAATGGGAACCTTGTCAGAAGAACAAACCCAGCAACTTGTTAAGTTTGTTGGGTTTGTTCATGATCTGGGAAAGGCCACGCCGGCATTTCAGATGAAGCAGTCCTATG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15855-16919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWJ010000018.1 Levilactobacillus brevis strain ASK-1 18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15855 29 96.6 32 ............................C AAGGTGGCAACTCGTGTAATCGCGTGATTTTA 15916 29 100.0 32 ............................. AGTATCATGATAATCTTGTATTTTTTTCCAAT 15977 29 96.6 32 ............................C GGCAAGCTTAATGCTGCCGTTTTAGATGATAA 16038 29 96.6 32 ............................C GGTAGCAGCCGTCGCGGGCTTCCGAGAAACTC 16099 29 96.6 32 ............................C ATGTCATTGTCAATGACCGTCTTGCCAGAACC 16160 29 100.0 32 ............................. TATGTACAAGACTTAAGAAATGGTAAGATACA 16221 29 100.0 32 ............................. ATTGAAAGCAGAATCATCGTCACTGGCACTAT 16282 29 100.0 32 ............................. GATATATGAACTGGCTAAGTCACCACCAAGAT 16343 29 96.6 32 ............................C AACTTTGATACCGTCCCAACTGTTAACAACAA 16404 29 96.6 32 ............................C GTTGAAGGCGATGTACGTGAATTGAAAAGTAA 16465 29 96.6 32 ............................C TAAATCTTCTTTAATGTCATGCTTCATGAAGG 16526 29 100.0 32 ............................. AATAACGGGACCGTAGAAGTCCTTGTGCTTGC 16587 29 100.0 32 ............................. TAGTTTAGAAAGGACGATTACATGTTTATTTA 16648 29 100.0 32 ............................. AGAGTATGAAGGTTCTTCCTGTTACGTCACAG 16709 29 100.0 31 ............................. CTGAAAGTTGGGGATAACGTTGGGTGTCTAG 16769 29 100.0 32 ............................. TCCTTGCAAGATATGATTGTTCGTACTACTAA 16830 29 96.6 32 ............................C GTTCAACAAATTGATAGTCAATGGTTCTTGAA 16891 29 89.7 0 .......................A..GG. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.9 32 GTATTCCCCACGTGTGTGGGGGTGATCCT # Left flank : GTAAAGGATGACATCATTTCAATTGGTGCGGTCAAACGGGTACCGGGACAACCAGAGGATTTATTTGATAATTTAATCAAGGCTGAGCGAGCTATACCGGAGAATATTACAACTTTGACCGGACTTACGGCGGAAATGTTAGCGACACAGGGGATTAGTTTATCGGCAGGACTACAAGAGTTACGTGAATTTGTTGGTTCCTTACCGATTGTTGGCTATAATCTGCGATTTGACGAAATGTTTCTAACAAGCGGTTTTAGAACAATTAATCAGCCAGAATTAACAAATCGGATGATAGATTTATTACCGGTGATGAAGAAGACTGATAAGTTTCTGGATAACTATCGCTTACAAACGGTATTAGCTAAATTTGATATAGTGAATCAGGAACCCCATCATGCCCTGGCAGATGCGAAAGCTACTTTTGCGCTTGCGGACAAACTCATTGAAAACCGGGTTTTGAAAATTTAGGAATCCCGGTATGACAGCGATTCTTTAGT # Right flank : TTATCAAGGTTTTTAGATGCTGAACAATGTCTCATATTTCCAGCAGATGACAGAATCCGTATTTAAAGATTCCAAATAGAAATATGACTATTTACATGGCGCTCCATTCTTAAGAAGATATCGGCTATTCAGAAGTATAAGAAGCCCAATCCGATCAGTAGTCGTCGCGTATGTTATACTAGTGAAATTAGAAATCGCTTAATCCGGCCGTATGCCCACCGAATGAGCATTTTCGGGCAAATAAACCACCAAAAGAAAGGATCATCACGATGTCAATTTTAAATTATGCGGAGCAGGATTCATGGTCAAATGGGTTTGGTTCCCAACAATCACCGATTGATCTGCGTCAGGCTGAACCCACTAGTGTTACTAATTTTGTAGTGACAGATCCATGGATAGCTGACCGAGAAATCGATGACCAAGTGACCATTCAGCTTGCTGGTCACGGGACAACGCGAATCAATGAGATGACTTGGCATTTTGTGCAAGCCCACATCCAT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //