Array 1 352856-353063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGCG01000001.1 Yersinia kristensenii strain IP24139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 352856 28 100.0 32 ............................ GGGATGGATATCTCAATCACTTCAACGAATAC 352916 28 100.0 32 ............................ ACTGTGGATTCAAGCGCATCCAGTTTAACTTT 352976 28 100.0 32 ............................ TAAATTATCAGATGGGGATGTAGTTGGTATTA 353036 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCAGAGAAGATCCATGGATGGCGACGGAGCAAGGATTTTTCACGTCCTTTAGCAAGAAATAGGCGCATTGTAAGAGTCTTATTAAATCAAATAGTTGAAATTGATAAGTCATTATCAATCAAAATAAGGTGCTAATGATATAGCAATATCATGTCACTCACTACCACAGCGGCCTTGATATCTGGTGGCAATATCGCGTTGAACAGCGCGACTAAAAACTTTTTCACTACTATATTCATAGAGCTATAATAACTTTCTTTCTTCAAAGTAGGGACCGCATCATGACGAATAAGCAAACTGACTTAGCACTCACAGAAAAACAAAAAGAAGAAATTGACGAAATTGCGCTACAACGCGTTCAGGCAATGAACAGCGATGAGTTTCTGTGTAATAGCATTGACCAAAAAATTCACTCGATGGAAGAACAAGTTAAGTCCTATTTCCAATCGCGTTTTTCGTTCCACTTGAACCAAAAAAACCGCGATCAATAAAGGCTCTTT # Right flank : AACATTTCACGATTATTGGTGAAAACGGGACAATTCGAGTGGAAATATGAGGTTAATGAGGGGGAGGGTATGGCAAAAATATGCACCGCTGCGTATGTCTATGGTGTGGTTCAAGGTGTAGGGTTTCGCTATAGCACGCAACGGCAAGCACTGGCGTTGGGGGTGACCGGTTATGCCCGCAATTGTGACGACGGCAGTGTAGAAGTGGTGGCTTATGGTGAACAACAGGCGGTCGAGCAACTGATGGCGTGGGTCAAACAGGGTGGGCCACGGGGCGCGCGAGTTGATCGCCTGCTGACAGAACCTCATCCGGCCACACCATTTGAGACATTTAACATTCGTTATTAGCCGACTCACCCAGAATGTGGCCGTTGGTTAAATACATTTCACCGGTTTTGGCAGCCCGGCAATTTTTGTCGCTTGCTTTGCAGGCCCCTTGGGGAATAAACGATAGAGATAGCGGCTATTACCTTTTTCTTCACCGTATTTCTGCGCCATGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 354797-355845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGCG01000001.1 Yersinia kristensenii strain IP24139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 354797 28 100.0 32 ............................ CACGTCGGCCACCGTTTCCAATTTATAGACAG 354857 28 100.0 32 ............................ GATAATGGCCATTAAACCTGCATGGTCAGTCC 354917 28 100.0 32 ............................ ATTATAAAGAGGCACAAGACCCCGGAAAGTTA 354977 28 100.0 32 ............................ TAGATTTAAATAAGTATCGAGTAGACGCTTGC 355037 28 100.0 32 ............................ AGTTCCACACCCGACCAATCGCGCTGCCGATG 355097 28 100.0 32 ............................ ACATCGAATCAATTCTTCAGCAGGTTGAGAAA 355157 28 100.0 32 ............................ AGCGGTTCGAATGCAATGCAGCTCATCACCAA 355217 28 100.0 32 ............................ TGCCTCCCCATTGGGGAAATTAATCCCGGCGA 355277 28 100.0 32 ............................ AACGTAGCCTAGGCTTTTGGTTACAAAGAATT 355337 28 100.0 32 ............................ CGGTGCATTCTTCGGTAATGGCTTTTTGGTTG 355397 28 100.0 32 ............................ TTTACCGCCTCATTAACAGGGAAGAAATAATG 355457 28 100.0 32 ............................ GATTTTGATGTTGAGCAATTCAAGTTTTTGAG 355517 28 100.0 32 ............................ ATACACGATGTGAAGGTTCTAGCCCATTCGAA 355577 28 100.0 32 ............................ AGCTCCCACACAGGCAAACGGCAGATATCAGC 355637 28 100.0 32 ............................ GCCAACGGCCGCAATAATAATATCGCCATGTT 355697 28 100.0 32 ............................ GTTAGCAAGTCTTCATTCAGCTCTACGCTCTG 355757 28 100.0 32 ............................ TGTTTGAGTTTTAAATTCAGCCAATGCGTTAT 355817 28 85.7 0 .....................AC.TC.. | G [355839] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCTTAATCTCAACTTGAACCCTTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTGATAAAAAAATCATTTTTTATCACCGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACTGTTCACTGCCGCACAGGCAGCTTAGAAAGTCATGATGAGGTTCGGCAATACGGACGCCATAGTTCACTGCCGCACAGGCAGCTTAGAAAGGTTAACTGTTACGGATGCTCTTGGGCGTCCGGTTCACTGCCGCACAGGCAGCTTAGAAAATATCCCACCACACCCGCCGGTACCGGTTTTTGTTCACTGCCGCACAGGCAGCTTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCGATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 364833-365580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGCG01000001.1 Yersinia kristensenii strain IP24139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 364833 28 100.0 32 ............................ GGTAATCTGAATTAAGCCGCGACCGCGATACT 364893 28 100.0 32 ............................ CTACCATGACATTTTTCCCAACGTCTGTTTAA 364953 28 100.0 32 ............................ TGACCGATATCTGCCCGCCAGCATAAACCCCG 365013 28 100.0 32 ............................ TTGAAGCAATGAATCAGACGATGGCGACCACT 365073 28 100.0 32 ............................ GATGTATGAATAACCGTCTTTAGCTGATAATG 365133 28 100.0 32 ............................ ATCGTGTATTCAGCTTTAGCGTAACCAGCTTC 365193 28 100.0 32 ............................ TCGGAATGATAGAAAGGCGAATAGTGGAAGCG 365253 28 100.0 32 ............................ GTTAAATGTTGCTGTTACTATTTGTTGATATT 365313 28 100.0 32 ............................ CACATAACAAGGCCGGACGGCATCACACAAGA 365373 28 100.0 32 ............................ GGTATAAGCGCTGGACAATGTGTTTTAAATGC 365433 28 100.0 32 ............................ ATAAGAGATGGCTGGGCCACATAGATTGCTGA 365493 28 100.0 32 ............................ AATGAAAGCGCTTAGTTCGTCTTTCGGTAGGC 365553 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCGTTACTGTTCACTGCCGCACAGGCAGCTTAGAAAGTCTGCATTCGCTAAAAGACTTCCCAGACCAAGTTCACTGCCGCACAGGCAGCTTAGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATGTTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //