Array 1 73990-73482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHNV010000062.1 Ligilactobacillus agilis strain T8a NODE_95_length_261875_cov_15.105799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 73989 30 100.0 39 .............................. AGATTTTAAAATACATCCAACCGCGCTTAAACGGAAAAT 73920 30 100.0 36 .............................. CCACATTAGTTTGCGAGGGCAACGGGGGACAACCGG 73854 30 100.0 47 .............................. AGGGCAACCACAGACACAACAGCCGGCCAAATCATGGACGGACGCGT 73777 30 100.0 36 .............................. ACGGTTATACCCAACTGCGACAAAGAAGTTAATCCC 73711 30 100.0 36 .............................. GCAAGTGGTCGTAAGAATGAATACAAGGTACAACTC 73645 30 100.0 39 .............................. TTTTTCCAGTCAAATTTAGCTGATTGACCATGTCGTCAG 73576 30 100.0 35 .............................. AAGAGTAAAGTAGCTCGTGGTTATACTGAATTACC 73511 30 96.7 0 ............T................. | ========== ====== ====== ====== ============================== =============================================== ================== 8 30 99.6 38 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : ACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTTAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAAGATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGATGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGCAGGG # Right flank : AGGGCTCTATTCAAAACGCTGGGTGTATTATTTTCAATGGATTCTAAGAAAACAACTGATTTTCTTAGAACCCCCTTTTTTCAAGCTTTAATTCAGAAGCCTATCTGTTGTTTTTTAAATTTAACTAAAAAAGGCGCCAACTTAGATTTCAGAAGTTAGCACCTTAAATAAGTTCTATTTTTCTTGGGAATCTTTGACGAAGTAAGATAAGCAGTTAATAACGATAAAACCGCCAATCATTGGAATTAAGCCGGAAAGCTTGGCGTCAAAGGTGTAGCCACTTAAAGCGGAAACGATGTAACCTAAGACTTCACCGTAGATGAATCCCCAAAATAAAATTGTTAATTGTTTTCCCATCATGAGCACCTCACAATATATAAGTAGTTTAACACATTTGTCCTAAAAAAGCATAAGAAAATTTTTACGAGAAATTTGTTATAATAACCTTAGTAGTTAAATGAGTAAAGGGCAAAGGAAGGTGAGAGAATGTTTTCACCCTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 179608-178718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHNV010000062.1 Ligilactobacillus agilis strain T8a NODE_95_length_261875_cov_15.105799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 179607 30 100.0 38 .............................. TTTTCCGCCCCCCTAAAAAAGGGCAAAAAAGTCCGCAA 179539 30 100.0 36 .............................. ATGAAATGGGGGGTAGGGGGGTTAAAAGTAGCATGT 179473 30 100.0 36 .............................. TCAATAGAAGATATCGAATCTGAAACTATAAATTTA 179407 30 100.0 36 .............................. TATAGCATATTTTTCTTTTACCCTTCTATAGATATA 179341 30 100.0 37 .............................. CCCTGACGGGTCTAAGTCATGCTCCCGGCATGTAAGC 179274 30 100.0 36 .............................. GTAATTCAACTCGCCTAGCAAGGTGTCTAGATTTTT 179208 30 100.0 37 .............................. TTAGCATACAAAGCACCATCAGAATAGTTTGCGTTTT 179141 30 100.0 35 .............................. GCTTGTGTTCAAGGAAATTCTAGACCGGTGCAGTG 179076 30 100.0 37 .............................. ACAGATAATCAGTTATAAATTCCGTGTCGGGCGCTTC 179009 30 100.0 37 .............................. GAGAGAGCCGAAGAGTAATGTGGTTGCTGACAATATC 178942 30 100.0 34 .............................. GACACTTGTCAAAGTTGATGCTTTTAAAGCGTTC 178878 30 100.0 36 .............................. AATTATCAAGCTAGCCTGTTAGAACAGCAATATAAA 178812 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAGTGCAATGAATTTTGC 178747 30 80.0 0 ..G.........T....A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 98.6 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TCTAAAGGATTGATACAAGGGCATTTGTTAGGATTTTAATTACTATCCCTGTACTCTCCTTAGGTAAAGTTTCATAGTGTTTTGGGACGTTCTAAACGTTGCTATATCAAGCTTTATGATTTATAAACGTTTGGTAATGTAATGCTTTTTTAGGAAAAGGTATGCTGAAAGTATGCCGGGTATGCTAAGAGAATATAATAACTTGCCCTGGTGAGTATCGTATATATCTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAACTTCAAGTATATATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAACTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : ATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAGGAATTATAAATCATGATGGTGGACCTAATCATATGACACTAGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAAATTAATTAATGTCCAGTTATTCAAAAATAACGTTACTTGGGCGAGATGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACGATTATCAGGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAATTAAATTAGCACTATGATTATAAACTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAAAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 236839-236347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHNV010000062.1 Ligilactobacillus agilis strain T8a NODE_95_length_261875_cov_15.105799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 236838 30 100.0 35 .............................. TTTTTTCTTCGATTTTTTTCATTTTAAATTTCTCC 236773 30 100.0 35 .............................. ACGGCAAGCAAATTGAAAAAGCATTCGCTGGGATG 236708 30 100.0 35 .............................. CCTGTTAGAGGGGGCTGTCAGTTTTTTACAAACAA 236643 30 100.0 36 .............................. AGCTATTCCTGGATTAGTTGATGAAGAAATGATTCG 236577 30 100.0 38 .............................. ATCGAAATTATGGGACAGAATGAAACACAGAAGCTAAA 236509 30 100.0 37 .............................. AAGAAATTAGCTAGTTTTTCCCAGGTTTCTAATTTAG 236442 30 96.7 36 .............................C CAATCAGGCTTCAACTTGCGAACAATCGCCGTGACT 236376 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 36 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTAGTACATCGTATGTTCTTGGAAAAAGAATAGCTTGGCACTATGCAGATAATAAAATTTCTCCTAGTGTATTACAAAAATTATCTAAAACTTGAAAGCATGAAATAGTGGACACTTCCCGCTATTTCATGCTTTCAAGTTTCAGGTAGGATGATATTTAAGGTTTGAATTAAGTGATTATTATCGATATTCTTAACGTTTTTAGTGTAAGCATCATCATGATTCTTAGTTCACTGGACTTTTTCTCATAAGAAAATTTAGCTGCAAAATTGTTGTGGTGAAGTACATTTTTTCTAGTGACATTTTGTTATAGAGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAATAGTGCTAGTATCGACAGACAATAAAAAGGTTGATATTATAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAGTTGAGAGTGAGATTAGACGATAGACAGAATATATGTGAAAACTAGTTGATAGTACAGGATTTTGGGAGTGCAGT # Right flank : TGTTTAAAACATCAACAGTGACATTTAAGCCTTGTTCTTTTAGAACTTCTCTTGCCTCACTTAAAGCTTTAGTTCTAGCTAATTCGGCACGTAAACTTGCAAGTTCTTTATCCTTAGCATCTTGCTCTTGCTTAGTTTTATCTTCTTCAGATAACTTTTTCACGGTCTTTTTACCCGACTTATATGCTTCAAGCACGACTTGGTATTTGCTAATTCTTCTTCCAAGTCGTGCTTATCACCAGTCAATTTTTCTAAACGTTTTTGAAGTTTTTCGACTGTTTTAGCAGCTTTATCTTCCTCGACCCTGCCGGCATTGTCTTGTTCGTTTTCCACTTCTTCACTAGTCTTTTCAACTTCTACAGCTTGATTTTTGTTATCCATTACGAAAACACCTTTCTTCTCGCAGTTAAAGCCTTGAGAGGCTACTCAGTTGTTCCTTAACGCTTGCAAGCAGGAAAAAGGCATAAAAAAGACGGTTATTGCTACTCGTCTATAATTCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 241495-241064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHNV010000062.1 Ligilactobacillus agilis strain T8a NODE_95_length_261875_cov_15.105799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 241494 30 100.0 36 .............................. AACTAAGGGTGCGGTTGCGGCTGCTAAGAGTAGTTT 241428 30 100.0 35 .............................. TCTTTGAATTGAAGCCCGTTGACGCTTACCGTCCC 241363 30 100.0 38 .............................. GAAACAGCTAGAAAAAAAGAGAGAGTTAGAACGTAAAC 241295 30 100.0 41 .............................. CAGGTAGCTTGGTTGATACAAAACAACCGACTGGCTAACGC 241224 30 100.0 35 .............................. CTAACTGACCCTTACCAACAAGGAACAGCCTGCTG 241159 30 96.7 36 .............................T TGAACTCAACGGCAGGAACTTCATCAAATAACGTTG 241093 30 90.0 0 ..A..............T...........T | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 98.1 37 GATTCTATTTAACTTAAGAGGAATGTAAAG # Left flank : AGTTGGTGAAGAAGTATGCTGGTTAATTATCATGTCCCTAAGCATGTGTACCTTGTTTGTGGTAACACTGATTTACGTAAAGGAATTGATACGCTGGTAATTTTGATTGCCGATAACTTTGGCTTAGATCTTTATGATGATTCCTTATTTTTATTTTGTGGGCGGAGAAATGATAGGTTTAAGGCTCTTTACTGGGACGGTGAAGGGTTCATACTATTTTACAAGCGGTTTGATAATGGACGTTTAACCTGGTCTCAAACTAGCGAAGAGATAACGTCCTGTTATAGAGTGTTTAGGATTTTATTAGCTATAAGGTGCATATATCTGTCGACCGAAGGTAAGGTAAAATAGTACGGGTATCGACAGATGACAAAAAGGTTGATATTAAGGGACTTGAAAGAATTTAGGGAAAAAAGTAGTATATAACTGAGGATGGAATTTGGTGATAGACAGAATGTATGTGAAACATAGTTGGTAGTATGAGGTTTTGAGGGTGTAGT # Right flank : TGCTAGGTCTAGTTTGGTAGAAACGGTGAGTGCGATGAATGTTCTATCGAATGCAGATTTAGAAGCAGATGACGTCGTGGTAAAACTGGTCACCTAGCGGGTAGCCACTTTGAATAAGCATTTTGTTAGCTAAACCGTTATGGTGGATTGATTCCGAGTCAAGACTTAGAGAGAATTTTAGGAAGATGTAACGTCTAGAAAGAGTAGCTTAAAAGTATTGGTTTATGCTGAAATTTTCGCGAAAGAAGAATGACTTGAAAATAATCTAATAATGTTAGATATAGACGCATAGCGCTAATGGAGGTGGAGGAGATGAAACTGTATAAATGGAAAAAAGGCGATGGAAAGCAGCTATTAGGGTGTTTAGTAGCTGTTTTAGTTGGTGGCATTATTGCATTGCCACTCTCGATTTTAGGTGTTACTTCAATTGATGATATAATCATTCCGGTTTTCTTTATTGTTGGCTTTATTACCTTTATTGGCGGTATCTTTAAATGGAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //