Array 1 1069-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRO01000006.1 Bifidobacterium longum strain TF07-39 TF07-39.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1068 29 100.0 32 ............................. CCGCCAAGGGTGGAGCCCACCGAGACCAGGAT 1007 29 100.0 32 ............................. ATCGTCCGCGCCATCCAGGTCGGCACCCCGCA 946 29 100.0 32 ............................. GGCATGTTCGAGCGGGGCGTGACCGTATGGAG 885 29 100.0 32 ............................. CCCACACAATCCGGGTCACTACACTCAGACGC 824 29 96.6 32 ............................T TCATCACCCTCCCAAGTCTTGCACATCTCATA 763 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 695 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 634 29 100.0 32 ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 573 29 100.0 32 ............................. ATGAGGTCACCGACCCTGGCAAGCCGCTGGTA 512 29 100.0 32 ............................. TCGTCGCGTCCCCTGAAGTCCCCTAGTACTGG 451 29 100.0 32 ............................. ATCGCGGGCAGCGGCTTCGACTCCTCGAAGTT 390 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 329 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 268 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 208 29 82.8 0 ............C......T....CG..C | CA [184] ========== ====== ====== ====== ============================= ======================================= ================== 15 29 98.4 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTATGTGTTTTAGCAAGTTGGCGTCCGCTTTGTGAGCGGTGTTTTTCCGCAGTGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1454-2028 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRO01000013.1 Bifidobacterium longum strain TF07-39 TF07-39.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 1454 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 1515 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 1576 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 1637 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 1698 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 1759 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 1879 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 1939 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 2000 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 93.5 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAATCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGATGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATAACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //