Array 1 1546-3404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHGT010000017.1 Phytomonospora endophytica strain YIM 65646 Ga0310468_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1546 29 100.0 32 ............................. GTGAGGTGATGGCCGTGGACGTCGGCGAGGGC 1607 29 100.0 32 ............................. GCCGACACCGACACCGATGAGTTCCACCCCAC 1668 29 100.0 32 ............................. GACATGGCGACCGTCGCTATCCGCACGCAGGC 1729 29 100.0 32 ............................. CCGCCGAGTTCGCCGCCTCGGCGATGGCTCAG 1790 29 100.0 32 ............................. CGTGGCTGCGTAAACACGAGTTGCCTTTTGAT 1851 29 100.0 32 ............................. CCGCGAAATAGCGTGTGGTACCTGCCGTCGTG 1912 29 96.6 32 ............................T ACCCGCGAGAGTCAGCGGGAGGGGGGACAGGG 1973 29 100.0 32 ............................. CGTTCAGGGGATCGGCTAGACAGCTGACCCCG 2034 29 100.0 32 ............................. GCCGGCCGTGCCGCTGGCGACGCTATGTCTAA 2095 29 100.0 32 ............................. ATGTACTTATTGGTGAACGTCTGTCCGATGTG 2156 29 100.0 32 ............................. GAGGTGATTAGGGTGTCGGCGATGCCGAGCCC 2217 29 100.0 32 ............................. GTGAGCCGCAGATCTGCGTCGAGGTCGTCCGG 2278 29 100.0 32 ............................. GCGGGCCTGACCGCCAACACCCCGACCGACCT 2339 29 100.0 32 ............................. CCTTGGCGCGGTGTTCACTGGATGAGGCCCGC 2400 29 100.0 32 ............................. TCCTGATCATGCCGAAACGCACCCTCGAAACC 2461 29 96.6 32 ...............A............. CGATCGTCAACGCGACCGATCGGCGCAACCAG 2522 29 100.0 32 ............................. CGCTCGCGCGAGCCGCTACGCCGCGTGAGGCA 2583 29 100.0 32 ............................. GTCAACCGGGCCATGGCCATCGAGGTCGTCGG 2644 29 100.0 32 ............................. TAGACCGTCGCGGTGTACGTCTCTCCACTCCA 2705 29 100.0 32 ............................. ATGGCCCGTCTCGGCGGCCTGGAGCTGGAGCC 2766 29 100.0 32 ............................. GTCATCATCGCGGGCACCGCGACCCCGGCGCC 2827 29 100.0 32 ............................. CTCTTCGGGCCTGCCGCGCTCGCGAGCCTCAT 2888 29 100.0 32 ............................. GTTGCAGCGCGTACGACTCTTGTAGTCAAGAC 2949 29 100.0 32 ............................. GGGCTGTAGACGTCCTTACCCTGCACGGACAG 3010 29 100.0 32 ............................. GCCGTCGGCCGCGGCCTGTCGCGCCGGTGCGT 3071 29 100.0 32 ............................. ACGACCCGTTTGCGCAGCAGGCCGGGGTCGGG 3132 29 100.0 32 ............................. GTTCTCCCGTGAGCACGGTCGCCGCGCGCAAC 3193 29 96.6 32 .............A............... CAGCTCGTACGACCTTGACGCCATGGCAAACG 3254 29 100.0 32 ............................. CGTGTCCCGGCTGCGGCGGGTGGCTGGAGGAG 3315 29 100.0 32 ............................. GAGCTGGGGAACAAGACGGCTCACCGTCGGTC 3376 29 93.1 0 .....................A..A.... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTGCTCTCCACGAGCGTGGAGGTGGTCCG # Left flank : GCACCAATGACTCACATCCACACGACGCTCGCTGTGGACATCGTCGCCTGGTCCTAACCGCGGGCCGGGTGGTGGCGCTGTTGCGTCCGGACAGCTTCCGGCTACTGTTCGTCGTCGCTTTCTGACTGTCTTGGTTGCCTCGTCGCAGCATGGCCCTCTACGACCTAACCGTCAGGAAGACCTTCCGCCGACAACCACCGGCTCGGAAACGCAGCCTCCGCTGATGCCTGGTAATGGCCTTCCTAGACCGGGACAAGACGCCAGGCCGCGTACACAGCGACACCCCGCAGCAGGCGCAAGTTCCCGGATTGCTGGCGAAATGAATCCACACGAACGCGGAATCAGTTGCTGAGGGATCGCGCCGCCCTAGAGGATGTCGGAGGTTCGGAACCTACTCTTGGCATGTGACGGGACATGCGGCAGGACGGATCATGCACGGCTGCGGAGCCATGGCTCGCCAAAACGTGCAAGAGGCTCGGTAAAGCTGCACTTCGCAAAGG # Right flank : GATCCCGCGGTGTTCGGCGCGAGGGCCGGGTTGATCTGAATCGTCAACGTCCTCGGGGTACACCTCTGGGTACAGCCGCATCATCTCCTCCCGGAGTCACTCCTGCTGCTCAAGGTGTTCGTCGAACCAGCTCTGGTATCTGCTCTGCAATGGTGGGTCTGTTGGGCGATGCCGGCACCCGATCCCACGCAGCAACCGGTGCGAGTGTGCCGGACGGTCGGGGTGGCGCACACCGGGTTGGTCTGTGCCGGGGTCTCGGTGTGGAAAGACGGTGGCAGGTCGTGGGATCCGGTCTCGGCCTTACCGCGTTCGCACACTGATCTGGTGGCTGACGTCGACGCGTTCACCGAAGGCCGGTCGGCGAAGGGTGCGGGTGCTGCCGTCTTCGACGAGGTTGAGCTGTGTGGCTCCCAGCCGGGTGTGGGTGTCGACTTCGATGGCCAGCAGGCGGATGTCGCCTTCGGCGACGCGCACCGGGACGGTCAGGGGCGTGATCCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGAGCGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101453-99656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHGT010000023.1 Phytomonospora endophytica strain YIM 65646 Ga0310468_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101452 29 100.0 32 ............................. CGGACGACTCGAAGCTGAACAAGACCTTGGAC 101391 29 100.0 32 ............................. TCGACGAGCTGGGGCAGCGGCATCGAGCAGCA 101330 29 100.0 32 ............................. ACCTGGGTGATGCACTTTTCGCTCTCGACCCG 101269 29 100.0 32 ............................. CTCATCGGCGCCGGCACCGACGACACGAAGTT 101208 29 100.0 32 ............................. ACCTGGCAGGCGTACGCGGCACTCCGCTACGC 101147 29 100.0 32 ............................. GGTTTGGAGTCGTTCGTCGATGACAACGGTGT 101086 29 100.0 32 ............................. TCACCGGCGTAGGCCTCGACGAGCTCGTCGGG 101025 29 100.0 32 ............................. ATCGGCCCCAGCCATCTCATCGACGAGGCCGA 100964 29 100.0 32 ............................. GACGTGAAGGTCTGGTCCGAGGTGGGAAAGCT 100903 29 96.6 32 ............................T GCCGTCAGCGCGTCCCGGATCAGCTGGGTAGC 100842 29 100.0 32 ............................. GCTTCGCCACGCGCCTGTCTGCGACGCTGCTC 100781 29 100.0 32 ............................. AACCGGCGGAACCCCGACTCGGGCGTGCGCAC 100720 29 100.0 32 ............................. CTGTGGGCGAAAGTCAGCGCTGGGAGCGCTGA 100659 29 100.0 32 ............................. GCACCGGGCAACTCAGCTGACCTGGCGAGCGC 100598 29 100.0 32 ............................. CGTTCAGGGGATCGGCTAGACAGCTGACCCCG 100537 29 100.0 32 ............................. AACATTAAGGATCTGATTGCGGAGATTGACAA 100476 29 100.0 32 ............................. CCGCCGGTGCGGGAGCCGCGCCGCTGGTACCT 100415 29 100.0 32 ............................. CCTCTCGGTGGTGCGTTCACAGTGGATCGGCT 100354 29 100.0 32 ............................. TTCGTAGGCGCCGTCGGGGTAGCCCATGTCGG 100293 29 100.0 32 ............................. CAGCCCAGGCATTCCCGCGACCAATGCGACAC 100232 29 100.0 32 ............................. ACCGTCGACGACACCCGCCCGTGGCTCGCCAC 100171 29 96.6 32 ............................T CATCGCCATTTGTCAGTCGCCCCAACGACATG 100110 29 100.0 32 ............................. GTCCGCCAGCTCCTGGGCTACCCCGGCACCCG 100049 29 100.0 31 ............................. ACGCGGGCGATTTCGATGCCGCGCTGTGATG 99989 29 96.6 32 C............................ GAACATCGAATCGAACAGCCACCGTACAACCC 99928 29 100.0 32 ............................. TGCGCGCCGGTGCGGGATGCGTCGACGTCGAC 99867 29 100.0 32 ............................. CTTGCGTGTTCGCGCCGCCGAGGTCGGTGAAC 99806 29 100.0 32 ............................. GAGTATCTCGGCTTCATTGCTGAGGAGGCTGG 99745 29 100.0 32 ............................. GCGGTGGGCGTGTCCGCATACGGGTCGCGTCC 99684 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGCTCTCCACGAGCGTGGAGGTGGACCG # Left flank : CGCTGTCCCCAACCACAACCGGCCGGCCTCCGCATGACCTAGCCGCCGTTGTGACACGTACGCCGGATATCCCGTCGGCACCGTATCGAGTGCCTGGAACAACAGCATGATCTTTCCGAGGTCGTGCAGACCCGCGATGAGCTCAACCAAACGACACGCCGCGGCCTCGTCCAACCCGAGCTGATCGGCCAGCCACGCCCTGCTCCCCGGGGAAACGAACGACGACCACAGTTCCCGCACCATCGCCGCGGTGTCGAGAAGGTGGCAGACGACGGGGTAACGCACTCCGTCACCAAGATCCTTCGACTTTCCCCACAGACGCAGATCGACATCCCCAGGAGACGGACCCATCGAAGCCTCCAGTGCAGCAGCATGGCAACAAGGCCAGAACTTACTCTTGAGCGGTGACAGGACAACCGACAGTGGGGACGGTGTCTCGGCGCTCGACCCAGACGTGTCAAAACGTGCAAGAGGCTCAGTAAAACTGCACTTCGCGAAGG # Right flank : GAGCGGTTCAGCGGCGGGCTCGCTCGCATGTTGTGACAACGTATCCAGGGTGGCGGCTTGCCCTGGTCAGCGCCTCGTCGCTGGCCAATTGTGTTGAGCGCCGCAACCTGACTCGTGTTTACTGCGGTGCCGGTACCGGTGGTGTCGGCTTCGTCGTGGCTGGGAGTTTGCTCATGCAGGAGATAGATCCCGTTGCTCATAATCGGGCGGCTTGGGACCGGTACGTCGATGCGGGCAACGAGTGGTCGATACCGGTGGGTACCGACGATGTCGAGCGGGCTCGTGCGGGTGACTGGTCGATCGTTCTGATCGGGCGTGAGCCGGTCGATCGCACTTGGCTGCCGGCGGACCTGGCCGGTAGGGACGTCCTGTGCCTGGCGTCTGGTGGTGGTCAGCAGGGGCCGATCTTGGCTGCGGCGGGGGCGCGGGTGACGGTCTTCGACAACTCGCCTGGTCAGCTGGGGCAGGACCAGATGGTGGCCGAGCGTGACGGGCTCGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGAGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 111193-114088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHGT010000023.1 Phytomonospora endophytica strain YIM 65646 Ga0310468_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111193 29 100.0 32 ............................. GCCTGGAAGATGCCGTACTGGCTGGCCAGGAT 111254 29 100.0 32 ............................. GACTTCGGCTAGGTAGTGGGGGTGGAGCTGGT 111315 29 100.0 32 ............................. GCGTCGACAGCATTCGTGGCCTGCTGCACGAG 111376 29 100.0 32 ............................. GCCCCTACCGCTGGTTTCAGAGCTGCGGCATC 111437 29 96.6 32 ............................T GCCTCGCCATGGTTGCCCTTGAGCCGGGAGGA 111498 29 100.0 32 ............................. TCATCGTCCACATCGTCCACCTCGGAGGTTCC 111559 29 100.0 32 ............................. GAGTCAACATGAGCAACAACGACACCGGCGAC 111620 29 100.0 32 ............................. CACGCGGAGATGGTGTGGCTGGGCGTCAACGT 111681 29 96.6 32 ............................A GACGCAGTCGGACAAGGACCTCGGTTTCGATG 111742 29 100.0 32 ............................. CCGGGGCGGAGTCGATTCGGCTCGGTGCCGAC 111803 29 100.0 32 ............................. GGAAAACCGCAACCCCAGCACGCCGCTCAAAT 111864 29 100.0 32 ............................. CCAGCGACGGCGACGTGTGGCAGGCCGTCCAC 111925 29 100.0 32 ............................. CCGCCTCTGCCGATGAGCTCGACGAGGACGAC 111986 29 100.0 32 ............................. GCGGCCGCCCGCGACGCGTGGGCTGAGGGCTG 112047 29 100.0 32 ............................. GCTCGTTGAGTGGTCCGAGACCCCGAACGCGC 112108 29 100.0 32 ............................. GATGTTTGTCACGTTCGCTTCGCTGTCCATAC 112169 29 100.0 32 ............................. GGCCGATGCACCGCGAGAAGCGCACGCTCCTG 112230 29 100.0 32 ............................. TCGACGTCGCGGAGGAGGCTTGACGCGGTCAT 112291 29 100.0 32 ............................. TAGGCCACGAGCGCGGCGAGGATCTGCGCGCC 112352 29 100.0 32 ............................. ACTTCGCGGGCGCGGCGGTTCTTCGCGGCACC 112413 29 96.6 32 ............................C ACAACACCCACCGCCTCATCCGGCCGGTGACC 112474 29 100.0 32 ............................. ATGTCCGGCCGCTTATCGCCCGTGCCGTAGAG 112535 29 96.6 32 ............................A TTGGGAACGATCTCCGGGAGAAAAAGGCCCGC 112596 29 100.0 32 ............................. CCGTCGGCGGCGGAGTGCAGCGTGGTGATGTC 112657 29 100.0 32 ............................. CCGCGTCCGGCCGAACGGCAACAGTTTCGACA 112718 29 96.6 32 ............................T GCCCTCCCCACGGGGTCACCTTGTCTCGCAGG 112779 29 100.0 32 ............................. ACGGAATGGACGCCAGCACAGGCGGCGAGCGC 112840 29 100.0 32 ............................. ATCATGAACGCGAACAACAGCCGGGAAGACGT 112901 29 100.0 32 ............................. CTTTCGCGAGGGCCGCCGCAGGCACCGCCAGG 112962 29 96.6 32 ............................C GATCGGCCGGACCCCCGACTGGGACAAATGGC 113023 29 100.0 32 ............................. TGGGATCGGACTTCACCGGGGAAAACACGGCA 113084 29 93.1 33 ...........A................T CGGCAGGCTCCCGGGGGGAGCGCGAGTTGGAGC 113146 29 100.0 32 ............................. GCCCGCACCGACATCCCGGCCCAGCTCGGCGA 113207 29 100.0 32 ............................. CGGTCGCAGTGAAAGCAGGGCACGCCGGTATG 113268 29 100.0 32 ............................. GCGCCCTGCCCCTGATCGGTGGGCGGCCCGTT 113329 29 100.0 32 ............................. GCCTCGCCGACGCGCCAGGCGAGCTCGTTGTT 113390 29 100.0 32 ............................. AGCGTCGCATCGCCGAGGCGGACCTCGTGCTC 113451 29 100.0 32 ............................. CTCCAGGTCGGTCGGGGTGTTGGCGGTCAGGC 113512 29 100.0 32 ............................. GCGTTGCCAGAACTCGTCTTCGGCGGCCGGCC 113573 29 100.0 32 ............................. CGCGGCTACCCAGGGACGGACGATTGGAGTCC 113634 29 100.0 32 ............................. GCGGAGAGGTCGGGTACAGCACCCGGTCGGGG 113695 29 96.6 32 ............................C GAGATGTCGACGGTTTCGGTGTCCTCGTCGAT 113756 29 100.0 32 ............................. CGCCCGCTCCGCCTCGGTGCAGGGTTTCCGTA 113817 29 100.0 32 ............................. CGATCGTCAACGCGACCGATCGGCGCAACCAG 113878 29 100.0 31 ............................. ATCCCCGCCGCGCTCGCGGAGTATCTCGCCG 113938 29 100.0 32 ............................. CCGACACCTCCGTGGGTGCTGACGTCATCCTC 113999 29 100.0 32 ............................. CGCTTTTAGTCAGTCAGCTCGTCATCGCCATC 114060 29 79.3 0 .......TG...A............AGT. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.9 32 GTGCTCTCCACGGGCGTGGAGGTGGTCCG # Left flank : TCGTCAACGACATCCAGGCCCTCCTCGACCCCGACACCGACACCGACACCGACACCCCCGACGAGATACCCCAACCCCAAGTCGTGAACCTGTGGGACCCCATCCGCGGCGAACTCCCCGGCGGTGTCAACTACGCCACCAACGAAGACTGGTGAGGCAGGACCGCTGTGGCAAACATGGTCGTGATCGCGACAACCGCAGTACCTGACCACGTCCGCGGAGCACTCACCCGCTGGATGACCGAACCCGCACCGGGCCTCTACGTGGGCACCATGTCCGCGAAAGTCCGCGACGAACTCTGGTACGCCGTCGCCGCCTCAGTCGCCGACGGTGCCGCGGTATGCCTTTATCCCGCCGACAACGAACAGCGCTACGCCATCCGCACCGCCGGACAACGCCGACGCCGACCGATCGACTTCGACGGGCTCACTCTCGTGGCGTTCCAAGGCCTTGACGAGCAGAACGGTAAAACGGGTCAGTAAAAGGCCAGCTCGCGAAGG # Right flank : GGCCACAGTTTTCCGATGGCCGCAAGTGATCCGCATGACCAAGCAGCGCACGGCAACAAAGCCCGCCGCCAAGCTAGGGACGACGGTCGTGCCGCTAGAGGATGAACTCTGGCATCCGCCTGGGGCGAGCCTCCGCGGCGGACAAAGGCCGCCCTGGCGGTCGCGCGGGAGCGCTCTGCCAGCGTTCTCCGCATGGTGTCGGCTCGCTCCTTCTCACTACCGCCATTGTGACGAACTTATCGGCCTTCGCTCGGGAGACGGCTGCTCACCTTCCGCGCGCAGGCCTCCATGACCGCTCGCGCGTCCATCCCGAGCGACTCAATGGCCACCAGCGCGGTCAACGCGACGTCGGCCAATTCGGCGGCGACATCGTCGTGGGAGTGGGTGATCCCCTTGCGAGGGTTTTGTCCAACGGCGCCGATCCATGCGCCAGCGGCTTCCCCGGCCTCCTCAGTGACCTTGAGGATCCGGCAGGTCAGTTCCATCTGACTGGATCCGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGGGCGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //