Array 1 23231-24715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDY01000007.1 Pasteurella multocida strain 2403PM isolate swab isolate 1 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23231 28 100.0 32 ............................ AATAGTAAATTAAAATTATTGCAATCAACTGA 23291 28 100.0 32 ............................ ACTTCGATAATAAATAAGTTCTCTTTATGAGC 23351 28 100.0 32 ............................ ATTTATTTAGATGATTTTTTGAGGGGCGGAGA 23411 28 100.0 32 ............................ AATAGATGAGCTGTTTGTAACGGAGTTTCAGA 23471 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 23531 28 100.0 32 ............................ GTTCTTTAAAGAATACAAGCTCAACTGTATGA 23591 28 100.0 32 ............................ TTTGAGTAGTAAATATTATGGAATTCATTCAG 23651 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 23711 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 23771 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 23831 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 23891 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 23951 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 24011 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 24071 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 24131 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 24191 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 24251 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 24311 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24371 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24431 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24491 17 57.1 0 .............-.A..---------- - Deletion [24508] 24508 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24568 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24628 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 24688 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 97.9 31 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96266-91315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDY01000004.1 Pasteurella multocida strain 2403PM isolate swab isolate 1 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96265 28 100.0 32 ............................ ATTGTGCAGTGACTTATGATACAGCAACAGGA 96205 28 100.0 32 ............................ ACGTCCGCAACCATTTTGTAGATGTCCTGAAC 96145 28 100.0 32 ............................ TATTGACCTCATAGGTTGCTGTATCGTTATTA 96085 28 100.0 33 ............................ AATAGTCATCGTCCACGATTGTCAACTTTTCGT 96024 28 100.0 32 ............................ CATGTTTGTTCCCCAAGTTGTTGTTGTTGTTA 95964 28 100.0 32 ............................ TAAAGCTTTGCCGTACATTAAACAAATGGACG 95904 28 100.0 32 ............................ TTGAGCAGGAAATATTATGGAATTCATTCAGA 95844 28 100.0 32 ............................ GTTGGTGGTCTGAACAAGAGTCACCGTTCCAG 95784 28 100.0 32 ............................ ACAAAGTTTGGCTTTCGTGACCAAATTTTAGA 95724 28 100.0 33 ............................ ATTTATCTTTAAAGCAGAGTAAGCCACCCATTG 95663 28 100.0 32 ............................ TTATCTGGGTTCTTAAGGTGACAAACAGTCAC 95603 28 100.0 32 ............................ TTTCATGATATCATCACCTTGTGGATTAAACG 95543 28 100.0 32 ............................ ACACAGGGAAATAGTCAGGTGTGGTCCACGAT 95483 28 100.0 32 ............................ TTTTAGCCACTCATTTAGTCGACCAACAGGTC 95423 28 100.0 32 ............................ GTACTTAGACGGGCTAGCTAACGAATCTTCCT 95363 28 100.0 32 ............................ GCTTGAACTAGAATACTCATAAGGTGGTCTTT 95303 28 100.0 32 ............................ CTTTTGTGTTCTCCCTAACTCTTTCATGTAAG 95243 28 100.0 32 ............................ TCAGCTGATTCCACTTCGATAATAAATAAGTT 95183 28 100.0 32 ............................ GCGATGAAGACGTGAAAGGTTTACTAGATACT 95123 28 100.0 32 ............................ CCAGTTCGACGTGCTGTGAACTTAGGGTTTCT 95063 28 100.0 32 ............................ TACGTGGAACTAATGAGATTGACAGTCGTAAG 95003 28 100.0 32 ............................ GCAATGTTACTAGCGAATCAGCTTATGGTTAC 94943 28 100.0 32 ............................ ATTGAGATAAGGGGTCGTTAGGCATCACACCT 94883 28 100.0 32 ............................ AACAATGAATGCGTTCTTACGCTGATTCATCT 94823 28 100.0 32 ............................ AGTGACATACTACCCCCTACAACTTCTTCTTC 94763 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 94703 28 100.0 32 ............................ AAATTGTTAAGAACGTTATAAGCGTCTGTTTG 94643 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 94583 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 94523 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 94463 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 94403 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 94343 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 94283 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 94223 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 94163 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 94103 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 94043 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 93983 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 93923 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 93863 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 93803 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 93743 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 93683 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 93623 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 93563 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 93503 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 93443 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 93383 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 93323 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 93263 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 93203 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 93143 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 93082 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 93022 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92962 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 92902 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 92842 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 92782 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 92722 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 92662 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 92602 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 92542 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 92481 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 92421 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 92361 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92301 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 92241 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 92181 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 92121 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 92061 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 92001 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 91941 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 91881 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 91821 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 91761 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 91701 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91641 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91581 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91521 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91461 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91401 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91341 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 83 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //