Array 1 1007648-1006911 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946259.1 Enterococcus raffinosus ATCC 49464 acvJY-supercont1.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1007647 29 96.6 36 ....G........................ CACAGGATTGGTCTTGATGCTTGTTTTGAAACAAAA 1007582 29 96.6 35 ....G........................ AATTCTCCATCGATTCGAATATAGCGGGGTTCTCT 1007518 29 100.0 36 ............................. GTTGATGTTCCAAATGAGGCATATCATGGAAGCGAT 1007453 29 100.0 36 ............................. GCTGCTAGGTCCAACCCTACTTACTCAGCTGTAATT 1007388 29 100.0 36 ............................. GTATCATCGTCATACTGAAATTCCGTAAACCACATA 1007323 29 100.0 36 ............................. ACAAAGAGCGGTCTTGATTATTTCCCTCTTGATGTT 1007258 29 100.0 35 ............................. ATTTCAAAAACTATAAAAGTGAATGATAGAAACTA 1007194 29 96.6 36 ...A......................... ACAGCAGTAGAAGAGAAACTCATTGATATCAAGTTC 1007129 29 96.6 35 ...A......................... CAAGTAATTGTTCCAAGGATCGGAATTTTAACAAG 1007065 29 96.6 34 ....G........................ GTCATTGCCGTAGAGAAAGTATTTCCTGGGGCTT 1007002 28 93.1 36 ....-...T.................... TTCCCTGACGCTTCAACACCTACGCCTAGCCCAGGC 1006938 28 79.3 0 ..............C.A..-....G..CG | ========== ====== ====== ====== ============================= ==================================== ================== 12 29 96.3 36 ATCTAAATCTAAAATAGTGGAATGTAAAT # Left flank : AAAGGCAAATCTTGCTGCTTTTCACTTAACAAACTATATTCTTCTCGAAGTTGAGCAAGTAGATATAGATGATTTAGAAGGAGAGTTGTATGAAGTGTCTGCAGAATGTCGCTACGTTTGGGAAGCGATCCTTGAGAAAGCGACCATACAAGAAAAAGAGACAATGTTTACTTGGTTTAAAAATCAGCTTAAACATTCTAACTATGGGTTAAGTTATAGTGAAATTGAACAAATTTGTGAGGAATATTTTTAAGGGATAGAGTTTATGAGAGGGTAGGAGTGGATTCTGCTGATAAATCAAATATTCATCAAGAATTTCTAGTAAAAAGCTTAGTACAAGTGAACCAATCACAATTAAATTGACGCTATTTTTTTTGGGGGATCTGTCGACCTCAAAAAATCAGAAATTTCTGTAGTTGCGACTGCAGCATGAAAATGTTGAATTCTAAGGATTTTCTGTTAAGAATACTGTTATTTTTGTTGAGTGATGATGTAATAAA # Right flank : CAAATTATGTTATCACACAACCAATTCACCCAGAAAATTTCTCCAATTCCAAAGCACTAACCCCATAAAAAATCTACAGCCACCATCGCAAAAACACTTTTACCAGCTGGAGAGTGTTTTTTTGTCTCTTTATTTATTCCTAAACTCTGAAACTTTCATCCGAAACGTGGGTGATCTTTGCTAAAATTAAGAATAAAACCATTATTTTTATAAGGAGAAGACCGATGCAGGAGAAAATAAAGGTATTGATCATTGATGATGATCAAGAGCTGTGCTCGATTATTGAACGGTATTTGACGCGTGCTGAGTATGAGGCGGCGTTTGCTCATACGGGTGCGGGCGGATTGAAAATGGCCTTAACAGGGGAGTATCACTTGATCGTATTGGATATTATGCTGCCGCAAATTGACGGGTTGAGCATTCTAACAGAGATTCGCAAGGAGAGTGTGGTGCCGGTCTTGATGTTGACAGCAAAGAACGAGGAGGCGGATAAGATTCGC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTAAATCTAAAATAGTGGAATGTAAAT # Alternate repeat : ATCTGAATCTAAAATAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1010345-1009328 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946259.1 Enterococcus raffinosus ATCC 49464 acvJY-supercont1.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1010344 30 100.0 36 .............................. GCTATTAATGCCATGCAAGTACCAAACACACCGTTT 1010278 30 100.0 34 .............................. TTTGATAGTTTAGGTTATTTATTAGAAACAAATA 1010214 30 100.0 37 .............................. TAATAAAAATACTTATCCTTTAACAATTGGGATTGAT 1010147 30 100.0 34 .............................. CTGGTAAAAAGAAAGAACGAGCTATCACGATGGA 1010083 30 100.0 36 .............................. CCCTATGGAATAGGCTCACTAGAAGAAAAGTAACAC 1010017 30 100.0 36 .............................. TCAGTATATTTAAAGGATCGTGATCCCTTTGACCTC 1009951 30 100.0 36 .............................. ATTGCTCGCCCAGATGTTAAAAAGGCATTTGGACTT 1009885 30 100.0 36 .............................. TTGGCACACGACAGGCGATAGACCTGATGGAGCAAA 1009819 30 100.0 37 .............................. GTTAGTTCTCTAACCATTTGATCAATGGTCCACATTT 1009752 30 100.0 37 .............................. GCGATTACAGAAGTTGTCGATACTGACAATGAAGAAA 1009685 30 100.0 36 .............................. CCTTGCAAGTAACAACTGAAAAACTAAAAGGAGCTG 1009619 30 100.0 37 .............................. CCCACATGGTCGCTAAAAATACAAACAATATCCCCCG 1009552 30 96.7 36 .......C...................... GAGCGCCGAAGACGAGTACCAACTTGATCCGCCATT 1009486 30 100.0 34 .............................. GGCGTTGAGTACGAAATGGACATGACTGTAATGG 1009422 30 100.0 36 .............................. TTCATATCCCGAAGGTCATGCTCTGCTTCTCTCATT 1009356 29 90.0 0 ......................-.A...T. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.2 36 GTTCAAATCTAAAAATAGTGGAATGTAAAT # Left flank : TATGAACCTTTCAAAATTTGGTGGTGAAAATAATGTATGTCATTTTAGTTTATGATATTTCTTTAGAAGAAAAAGGCGCTCGTGTTTTGAACCGAGTATTTAAAATTTGTAAAAAATACCTAAGTCATGTGCAAAAATCCGTGTTTGAAGGGGAGATCACTCCTGCAAAGCTGAAAAAATTAGAACAAGAACTAAAAGAGTACGTTCGCGAAGACTTGGATTCAGTTTTAATCTTCAAAAATTCAAATAAGAAGTGGTTAAAAAAGGAATACATCGGAATTGACGGATCAGAACTAGTTTCGAATTTCTTTTAAGTTTTAAATCTGTCGATAGAGAATACCTTAAAAAACCGGTAGTTACGACAGACGATAGAGAATGTTGTGAATATAAGGTTCTTTTTGTTATCCAGTGTTATTTAATTTTAAAAAGGAAGTCATTTCTATGAGGTCGACAGAAATGAGTGAAAGAAGCCCTCTATTTCAATGTATAATAGTTGTGGG # Right flank : TTGGGTAACTAGAAAAATTCCAACTGCGAGTTAGATATCTAAAATAAGAAATTAATTTAAGAGGTAATTGAATATAAAAAAGCATAGTACATTATTGAATTTAAGAGGGTGAGAAGAGATGAAAATCTATACGATTCAACGGAGAGATTTTCTGACATATACTGATTCACAAGGATTTATAATTCCTAAAAGAGATCCAGAATACTCTATCTTTACGGATGACGAAGAAGGGGAAAATTGTCTGTGAGCATTAGAATGGATGAAAAGGCAATTTATAAAACGGATGGACATACCTTTAGATCGTGATTTAATCTGGGTTTGGCCGGATATCTATGCGTATCTTTCAGAAAAAAATGACATTGATTTTTCGAGACATGCTCTTTTCACCTTTGAAGTCCCTGCAGCTTACTACAAAAAAATGATTTTATGGTCCAATTTTATTAGTTGGCATGAGGTCTTGAACCGGTTATGGGAAGGAGTCGCAGATGAGGACGAACGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTAAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //