Array 1 668822-669374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072664.1 Campylobacter fetus subsp. fetus strain CITCf01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 668822 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 668887 30 100.0 36 .............................. AGAATTATATTTTATTACACAAGATTTAAGCCTTGT 668953 30 100.0 35 .............................. ACAACAGCACTTGGCTCTTGCCAAAACGATATACT 669018 30 100.0 35 .............................. TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC 669083 30 100.0 35 .............................. TACTAAATTTAAAGGTAGAAAACTTACTAATTATG 669148 30 100.0 36 .............................. CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC 669214 30 100.0 35 .............................. CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT 669279 30 100.0 36 .............................. CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG 669345 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGCGATCATATTATAAGCCAAATGCAAAATATCGCAAGAGTAAATCAAGCTAGCAAATATGGCGTAAAACACTACAAAGTGGTAGCTAGGATTGATAACCGCACAAGTGATATCTGTAGAAGTATGAATGGACGTATAATCCCAGCCTCGCATATAGAAACTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTTGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACAGGCGTGGAAAGAGTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 681422-683092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072664.1 Campylobacter fetus subsp. fetus strain CITCf01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 681422 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 681487 30 100.0 35 .............................. TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC 681552 30 100.0 36 .............................. ACCATATCATCTATGCTGATACTTTTGCCATTTATC 681618 30 100.0 34 .............................. GAAGCTAAATGACCATTAACAATAAACATATAAA 681682 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 681748 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 681815 30 100.0 36 .............................. AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT 681881 30 100.0 35 .............................. AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA 681946 30 100.0 34 .............................. TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG 682010 30 100.0 36 .............................. GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA 682076 30 100.0 35 .............................. TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC 682141 30 100.0 36 .............................. TATCTTGCAGCTAGCAATATTCTTATTATATTTATC 682207 30 100.0 37 .............................. AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT 682274 30 100.0 35 .............................. TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT 682339 30 100.0 36 .............................. CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA 682405 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 682471 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 682537 30 100.0 36 .............................. CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT 682603 30 100.0 35 .............................. TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT 682668 30 100.0 36 .............................. AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA 682734 30 100.0 36 .............................. ATAGGATACTTCCAGCCATACAAAGAACTATAAACG 682800 30 100.0 35 .............................. TTTATCATAACGCCACTCATTTGCCACCGCCAAAC 682865 30 100.0 36 .............................. AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA 682931 30 100.0 36 .............................. AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA 682997 30 100.0 36 .............................. GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC 683063 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGTCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATCCCTTGCGGGACGATAGCCGGTTGGAAGAGGTCTGATGGTTACAAAAAAGATATATATCTTTTCTTTAAAAACCTAGACCCGGAATTTTTAATAGAGAATTTTGGGGCCAAAACTCCTATAATTCCTTTGCTAGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //