Array 1 801-1095 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUQO01000072.1 Bacillus wiedmannii strain AFS056359 AFS056359_99_C10_Contig72_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 801 32 84.4 35 ....T.....T.G.....AC............ CATTGGCGGTAGTTCATAAGTAACAACAAATGGAT 868 32 84.4 34 .......T..TAG......C............ ATGATATTCAAAGAGCCTGAACAAGTGGAATCGA 934 32 93.8 33 .........T.........C............ GATGTATTTACGTATCAAGAGTTAATGGACCAT 999 32 100.0 33 ................................ TTACAAGCGGTACTTATGACCCTCAGGGTTTAT 1064 32 75.0 0 ...C......T.G..A.........G.A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 5 32 87.5 34 GTCGCACCTCATATAGGTGTGTGGATTGAAAT # Left flank : ATCCGATTGACATTACTAGTATGCAAATTACGAAAAGTGTAATGTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATATTTTATGGAAGTATTCATATGCAATGAGCAAAGAAGACAGATTTTACCAAAGGTGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCTATTATTGATGGACTGTAATGAAGAAAACGTTAGAATAATTGATGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : TGATAAGATAATTGATAGTAATTTAGTTTCTCTGTTGGAATAAGAGGACCTGCTTCAATTCATACGGCAACGAGTGTTGATCCGATTGACATTACTAGTATGCATATTACGAAAAGTGTAAATTCTGAGTCTGGCAAGGATAAGGGTTCAGATACGATGGGGATGAAGCAGCGTGCTGATTTTGGAGTCTATCTTTTTTATGGAAGTATTAATACACAGTTAGCAGAAAAGACAGGATTTACTAACGAAGATGCGGAGAAGATTTAAAATGCACTGGATACATTGTTTGAAACTGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAA # Questionable array : NO Score: 6.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59-353 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUQO01000014.1 Bacillus wiedmannii strain AFS056359 AFS056359_99_C10_Contig14_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 59 32 84.4 34 ......T...T.GC.......A.......... TTTATGGTAACTGGTGGTTTAACATATCACATTT 125 32 93.8 34 .........T.........T............ TTTGATATACCTATTTTATCTATTGTTTGGATAA 191 32 100.0 35 ................................ AAGAAAAAAGGTCAAACTTTTAGTAATCAAAAAGC 258 32 87.5 33 ..AA.....T........A............. GGCGATATGCCAGGCATTAGGCAAAGTGTTATT 323 31 90.6 0 .........T.-..................C. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 91.3 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : GAATAGTTGAAAGAAAGTATCCTTATAAGGATATACTCTATCAATTTATTAAAGGAAAG # Right flank : TCTGTTAATTTCTTAACGAGGACTAGGAGCGTAAAATCACATCTCTTGTATGATTGTGATTAAACAAATTGAATTAAGAATACCTTGTGCAAACTTTTAGAATGCTAATAAAATTTTAGAAGTGAATTTTCAGTTTATCAAAGGAGGTCAATAATGAACAATAATTTCATGATAAAAATTAAAAACTTAATATTAAGTAAATCCGAAGGAGAATTTTGGGATTTTAAACAAGAGTGGCATAGAGACAATGAGAGATTATTACACGATATTCTTTGTTTTGCAAATACAGTGCATGAAAAAGACTGCTATATAATAATTGGAGTATCTGATAATGGAGATATAGTTGGGATAAATGATGAAAATAGAAGGGAACAGTCAAGTATACTTGACTTACTTGCTAATACTGTTTTTGCAGGTGATAATACCCCAAGAATTCAAATAGATACAATAAACATAGAACATAAAAAGGTTGATATTCTTACAATATTTAATTCTAATAA # Questionable array : NO Score: 6.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-7] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6517-7142 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUQO01000014.1 Bacillus wiedmannii strain AFS056359 AFS056359_99_C10_Contig14_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6517 32 100.0 33 ................................ ATACCAATCTGTATAGTTAGACATAGGGTAGGA 6582 32 100.0 34 ................................ TTAGAAAGCTATTGCAGGGTAACTGTTAGAAAAC 6648 32 100.0 35 ................................ CGTACAGAGGTTTTAGGCGAAATTTTAGATGAAGA 6715 32 100.0 34 ................................ ATTATTGATAAGGTACTGGTACAAGTTCTGAAGT 6781 32 100.0 35 ................................ TCATCTTTGTAGGATTGAACTACAAAAGCATAAAG 6848 32 100.0 33 ................................ ATCAATAAGAGTAGGCGGGGATTGATTTTATGG 6913 32 100.0 35 ................................ AATTTAAAACAGGTTGCTAGTGAACTAGGTTATAG 6980 32 100.0 33 ................................ AAATACCCGCCGTACTTAAAAGGATTAATGACT 7045 32 96.9 33 .....................A.......... CCGTTAACGAAAGTATAAAAAGCATACGTGCCG 7110 32 75.0 0 ....T.T..C.......A......T.A.G.C. | A [7133] ========== ====== ====== ====== ================================ =================================== ================== 10 32 97.2 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTGCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAATATTTTTCATACAGATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGGTAAGATGCTTGATAGTAATTTAGTGTCTCTGCTGGAATAAGAGGACCCGTTTCAATTCATACGGCAACAAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAATTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAATACACAGTTAGTAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAAATTAAAAATGCACTGGTTACATTGTCTGAAAATGATGTATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTTGTAAAAGAATTAGATAGTTTAAAAGTGAAGATTATTGATGGA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 171970-172530 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUQO01000014.1 Bacillus wiedmannii strain AFS056359 AFS056359_99_C10_Contig14_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 171970 32 100.0 34 ................................ TAATTGAGGTCCTTTACGGTTTGCATCAAGCGCA 172036 32 100.0 35 ................................ TCCAGTAACTAGGTGTAATTTCGCCGTTTTCGGTC 172103 32 100.0 35 ................................ AGTTGCTTATGTCAGAAAGATTAAAGAGGACAAAA 172170 32 100.0 34 ................................ TAAGCTATCACAGCACATTACCCAAGAAGTTCAA 172236 32 100.0 34 ................................ AATGGTTGAATGAAGCAAAATCACCAGATAAGTT 172302 32 93.8 34 ...........A..A................. TTCGGATATGAAGAAAAAGGCGTAAACTAAAACA 172368 32 84.4 33 ...........A..A.A..T...A........ TACATATTTGTGAATGGCAAGGTAAAAGGTTAT 172433 32 93.8 35 ...........A..A................. GATTGTAGTGGATTAACATCTTGGGGGTTAAAACA 172500 31 90.6 0 T.............-....A............ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 95.8 34 GTCGCACCTTATATGGGTGCGTGGATTGAAAT # Left flank : TCGAGTTTTATATTGAAAAGATGAACACGTATAAAGAGAAGAATAATAAAAGTATTCGTGAGCTAGCGAAAGAAATTGATATTTCGTATTCGACACTTTCAAGAATGTTATCGGGTAAAAGGAAACGATTAAATGATGATACGAAGAATAAGCTAGATAAGTGGATAGAAAGACAAGAAGTAATGAATTTATTGTAGATTATGACTTAATATATAAAGGGTATTATGAAACTATACATTGTTGTTTATCAGTTAGGTAATAGTTATGAAAATAAAGTCGAACATATTAGTGTAAAAAAATGAATTGATTTAGAAAGTCCTTTAATTTTTAAGTGCGAATGTATAGCAAACATAAAATTCCTAGTACATTCGCACCTATAATTCTTATAATGTATGATGGGAATTTATGATTTTTATACAAATTAATTTATTAAATAAAAATATTTGTATACTCTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTGGAAGTATCTATATCTGCAGTATCTATCATAAAAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAATGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATCGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCCGAGATAGTGGGAAACGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATTAAAAGGA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTAAATAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //