Array 1 1377614-1377097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFTJ010000001.1 Klebsiella quasipneumoniae subsp. quasipneumoniae strain IPM1H5 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1377613 28 100.0 33 ............................ CTAATAGTTTGAAAGTTACACGGTCTACTCTGG 1377552 28 100.0 33 ............................ TGACACAACTCATCGAGGCCAGACAGGCCTTGC 1377491 28 100.0 33 ............................ TCACTGGCTTCAAGCCCGCACAGATTTGCTATA 1377430 28 100.0 33 ............................ CAGCGACGCGAAGCCGAAGAACAGGCAGAGAAA 1377369 28 100.0 33 ............................ TATTCCCATTATCCCCAACAGGTTGCTCCTGGA 1377308 28 100.0 33 ............................ CGCTATTTATGTTCCGCGCGTCATGAATTACAG 1377247 28 100.0 33 ............................ CCAAAAACCTCACTGCAATGTTGTCGGGCTGTT 1377186 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 1377125 28 82.1 0 T......A....TC..........C... | C [1377103] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCCCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGATGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTTCGTGGGCGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCTGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTTCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAACTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CGCCCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCGATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCCGCCTGCCAGAAGGCATCCACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCCTCGCTACCCGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCTTCTCCTGTGGATGGGGATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1386716-1386323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFTJ010000001.1 Klebsiella quasipneumoniae subsp. quasipneumoniae strain IPM1H5 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1386715 28 100.0 33 ............................ CATGTCACTATGATTTACCACCGGTTCACCCAT 1386654 28 100.0 33 ............................ TACCGACTTTGGTCGGCCTTATCTACCCCGAGC 1386593 28 100.0 33 ............................ CACGATTGACCAGGACGACGGATCCAGCACACG 1386532 28 96.4 33 ..........T................. CATGCTCGCGCAGCGCCAAACCATCAGTTATGA 1386471 28 100.0 33 ............................ CTGGATGCGTCAGCATATCATTGACTCCACATT 1386410 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 1386349 27 96.4 0 .....................-...... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCAGGATAACAGTCTCCAGTTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTTCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGACATTGAGACAATCTTGTCCGCTGGATGAATGTTGAAGCTGACGCGAAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATAAGCTGCTAAACACAATATGCTGGT # Right flank : ACGTGACCGTTTATCTGATGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTATGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGGCTTTATGACTCATCTGGAGATATCGCTCTTCCTATTAATTATTTTTAATTTTTTATATTATTATTTTGGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGTTGTTGAGCCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 141370-139946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFTJ010000002.1 Klebsiella quasipneumoniae subsp. quasipneumoniae strain IPM1H5 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141369 28 96.6 32 ..........-.................. TCCGGATGATGACATTTCGGGTGATAATCATA 141309 28 96.6 33 ..........-.................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 141248 28 96.6 32 ..........-.................. ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 141188 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 141127 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 141066 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 141005 28 89.7 32 ..........-.TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 140945 29 93.1 32 ............TG............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 140884 29 96.6 32 ...............T............. TGACTTTTGTGAAATTTTTTTCTTAAAAAACT 140823 28 82.8 32 ..........A..AC.T....-....... TTAATGTTTTGTTAATTTATAAGTGTGGTGAA 140763 29 93.1 32 .........T...C............... CGTTCGGCTAGGGCGTTGACGGACGCATTTTC 140702 28 86.2 32 ...C......-..AC.............. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 140642 29 100.0 32 ............................. AACAGTGGGATTTCACCTTTTAGGTTGAGTCA 140581 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 140520 28 93.1 32 ..........-..A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 140460 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 140399 29 96.6 32 .............A............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 140338 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 140277 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 140216 28 89.7 31 ..........-..G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 140157 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 140096 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 140035 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 139974 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 94.3 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCGGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : GGCATGAGCGCGAACCACTGCGAGAGTGTGGTGTATTCCCCCAGGGCGAGATCGTGAACATTTTGTTAAAAATTAAAAATAGTTTTTTGCCTACAAAACAAATACTTATAGGCCTGTGATATGCAGTTAACTTTATAGTCAGGATCGCCTTCACACTTTTTAATCGTCACTGCACGTCATTTCAGCTCAAAAAATGCGCATGAAATCCAAAAAATGATAATTTCCATGATTTCCATAGTTAACAATTTGCTCACATCCTCACCCTGAAATTTGACCTGGTGATCCGGCTGTGATCTCATGCTCCTTTTCAGGAGTGCTCTCATGTCTATTGATGCCGTTTTCGCTCAGTTCTTCGACAATATTCACGACCCTCGCCAGCATGCCAAGATTTATTATCCCTTCTACGATGTCCTGTTTCTCACCGTCTGTGCCGTGATCGGCGGGGCTGAGGGCTGGGAAGATATTGAGGATTTCGGCGAGGTTCATCTTCCCTGGTTTCA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //