Array 1 36881-36608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMS010000075.1 Streptomyces anulatus strain SID7903 contig-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36880 29 100.0 32 ............................. CACTGGAATTCTGGTGAGAACGCTACCGACGG 36819 29 100.0 32 ............................. CCGAGGAGCGCGTCGACCGCGTCCGGCAGGTC 36758 29 100.0 32 ............................. ACGGTCGAGGACGCCCGCGCGGTGTGGCGCCG 36697 29 96.6 32 .......................A..... TCCACGATGGAGCGGTACCGGGCCGAGCTGAC 36636 29 89.7 0 .........A..............CC... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : TCCCGCGCATCGTCCAGGACGTCCAGAGCCTCCTGACGCCACGCTCCACGGATGCCACGGACGAAGACGAGCCACAGGAGAAGCGCGACGTCCGACTGGTCCACCTCTGGGACCCCAAGAGCGGCACCCTTCCTGCGGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCATGCTCGTGATAGCCACCACGGCCGTTCCTGATCACCTCCGCGGAGCACTCAGCCGTTGGACCAGTGAGGTCGTCCCCGGCATCTTCGTCGGGAGTGTCTCCGCCCGCGTCCGCGACCAACTTTGGCAAGCCGTCACCGAGACCGTGGGCGACGGTGCCGCCGTCATCGTCCACCCCGCCCCCACCGAACAGGGCTACGCCATCCGAACCGCCGGCACCCGTCGCCGCGTACCCGCCGACTTCGACGGGCTTACCCGATCCGTATGACCGCTGCACCAAAGGTAAAGGGAATGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : ATTACTAGCTGGAAGAGACCAGCTGGCGCTGTGACCCGGCGCGATGAGGAGGTCTTGCTCGCTGGCCTACGCAAATAGTCTTTCGATTGTTGCCGGCTCATGCCAATTGATGGAGCTGGAAGTCCCAGAAAAGGCCCAGGGGATTCCTACGGCTGACGGCGCCTTTTCGGTTCTCCCCGACGTAGGACGGAGCGTCGACACCGGGACCTGTGCGCTGGGGGTCGCCTTGATCGAACGGCAGCACGGCCTCCCCGGATCGCTTGCCCGTCGGCTACGTCGGCGCGAGAATTTCCGTCACACCCGCGACGAACGCCTGCACCTCCTGCCAGGCCGTGTTGTGCGGTTCCTGGGGGCCACTACCTGGTCAAGCTATGCGCCGTGCAGCTCACCCAACCGGCGGGAAGGTCGAAGCGGCCCCGGCGATCCCGGGCCGGAGCGGATTGCGGCCCTGTCGAGGGCCGTTTCAAGGCGGCGGAGCTTGTGATCTCGATCGTCGAAGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46775-47600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMS010000075.1 Streptomyces anulatus strain SID7903 contig-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 46775 33 90.9 28 .............................GAC. CGATCTGCGCAGGGCCTCGATCGGCCCG 46836 33 100.0 28 ................................. CAGCGGCAAGACCGACGCCCAGGGGCAG 46897 33 90.9 28 ..............................CAA TCGGTGTAGGCACGGGCGTGGGGCAGGT 46958 33 90.9 28 .............................TC.G TGGCGGCGAGGATTTGTTCGACGGTGCC 47019 33 90.9 28 .............................TGA. CCCTTCAGCTCCTTGCCTCGAACTCACA 47080 33 97.0 26 ..............................G.. TGGAGCCGCGTTCACACGTACTACCG GA [47109] 47141 33 93.9 28 ..............................C.A GGATTGCGGCCACGTCCGACCCGCCGAT 47202 33 97.0 28 ..............................A.. TCGACGCGCACACCGAAGACCTCCTCGC 47263 33 90.9 28 .............................AG.A CGGGGGCTGTCGACGCGGAAGCGTTCGA 47324 33 97.0 27 ..............................C.. CGGGTACCTCGACGTGGAGGTGCAGGC G [47353] 47385 33 93.9 28 .............................A..A GCGGTCGCAGCCGTGCCTTCGTGAATTC 47446 33 90.9 28 ............................AG.C. GTGGCACTGCTGGACCTCATGCGCCATC 47507 33 87.9 28 ........................C....ACC. GGGCGCCGCCGTCGCGCCGGTTCGGCGC 47568 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================ ================== 14 33 93.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGC # Left flank : CCAGCACACAGGCCGACGAGCGCCCGAGCGCGATCCGGTTCCCCGGCCAAGCCCATCCCATCAGCTATACGCGCCCTCTGGTTCTCCGCCAGATAAACGTCCCACAAGTGGAGCGCCATCGCGGCGGCGTCGAGAAGATGCCTCACCAGCGGGTAGGGAGGAAGTGCCGGATCCAGCCCCCGAGCCTTTCCCCACACCGACTCATCCACCACGCTCCGCCCATGCGCCACGCCAGCCCCCTCCGCTCCACCACTCGAACCTGATCCGGCAACGGAAGCGAAACCGCCACCCATCGCATACAAGCACCCAGCACTGACATTGATATCGCTACTCGCGTACCGACGGCCGTTCCACGATCAGCAACGGGGCGCGGTCCTCGCCTTGGCGACCTTGCATGCTTCAGCTGGATAGAGTGACGGCATGCGTCTGACTGAGCGTCTCACCCCCTCAAGAATGGCAAAGAATATGCAAAGCCCTTCTTAAGGCGCAGGTCAGGAAGT # Right flank : CGCAGGTGGCTGAGCGGGACCGCTCAGCCACCACGAAGTTCCCGGCATTCTCCCGCACCCGTAGTGCACACGACCCAAACCTGCAGGTCAGGCATCCTTTGCGACGGGTTCCAGGATCGCCACACACTCCACATGATGCGTCATCGGGAACAGGTAGATGGCCGTCACGCACCTGTATCGGTGCCTGGACCGAGCGACTTCGTCAGCCGAGGGCGGGGATGACGGTGGAGCCGTAGGCGTCGATGGTGTTCTCGCGGTTGTCGTGCATGTCGTAGACGGCAAACTGGTCGACGCCCAGGGACTTCAGGTGGCGCAGCTTCTCCACGTGGGCCTCGGCCGGGCCCAGGAGGCAGAAACGGTCGACGATCTCGTCGGGGACGAAGGCGGTGTCCGGGTTGCCGGCGCGGCCGTGATGGCCGTAGTCGTAGCCCTGCCGGTCCTTGATGTACGCCGTCAGCTCCTCGGGGACCATCGAGGAGTGTTCGCCGTACTTGGCGACG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9681-8141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMS010000177.1 Streptomyces anulatus strain SID7903 contig-1000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 9680 29 100.0 32 ............................. GCAAAGACGATCGACAAGGTCGCGGCGGGCGG 9619 29 100.0 32 ............................. GACGAGACGCCCCTCGGCGCCACCACGGCCAG 9558 29 100.0 32 ............................. GACACCGCCACCCTGATGCGGGGTGCCCGCCG 9497 29 100.0 32 ............................. ATCCCGAGCGCGGGCAGGTCACCTCACTCTCC 9436 29 100.0 32 ............................. AGGACCAGCAGCACCAGGGCTGCGGCAATCAG 9375 29 96.6 32 ............................T ACGGCAGTCGCCTGCACCGGTAGTGGCTTCAC 9314 29 100.0 32 ............................. CGCAGGGCGGCGAGGAGCACTCGGATCATCGG 9253 29 100.0 32 ............................. GCACCACTCCGCATCGAACCCGAGGGCGGCAA 9192 29 100.0 32 ............................. TGAACAGCGTGCCTAGAAACAACGCAGGCAAC 9131 29 100.0 78 ............................. ATCCGGGCCACGAGGATGAACAGGAACACGGTGCGGGGTTGTTCCCCGCCTGTGCCAGGGATGCGGAGAGCCCGCCGA 9024 29 100.0 32 ............................. CCGACGTCGATCACACCTGGGAGACAGGAGTC 8963 29 100.0 32 ............................. ATCCTGGCCGGGATGGCCCGGCAGATGCTTTA 8902 29 100.0 32 ............................. AGCATGCGTGAGCGTGCGTCTTCGAGGTCCTT 8841 29 100.0 32 ............................. CGTATCCAGATGGCTGCTGCTGCGGCCGGTGT 8780 29 100.0 32 ............................. GCGGTACGACTCGCCGTCGAATTCCTTGCCAG 8719 29 100.0 32 ............................. TTGGGCAACATCCTGCGGGAGACCAGCTACCC 8658 29 100.0 32 ............................. GACACGGCTGAGGCCGTCTTGGAGCACGGTCT 8597 29 100.0 32 ............................. GTGTCCGCCATGTCATCGGCGCGCGGACCCAT 8536 29 100.0 32 ............................. AGGCCGTGCCGCCACCGGTGTTGCCATACCGG 8475 29 100.0 32 ............................. GGTGGCTCCGTCGCGGCGCTCCGTGCCATCGA 8414 29 100.0 33 ............................. ATCACCGTGCCGGGCGCCGGGGCGGGGGGCGCC 8352 29 96.6 32 ............................A AGGCCCGCCAGCGCGCGGCGCACCGGGGCCTG 8291 29 100.0 32 ............................. CTCGGCGGGCTCGGCTCGGCCCTCGGCATGTC 8230 29 100.0 32 ............................. CAGCCCTTGGACTTCTTCGCGGCCTTGTCGGC 8169 29 93.1 0 .....................G..G.... | ========== ====== ====== ====== ============================= ============================================================================== ================== 25 29 99.5 34 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : ACCCCGGCTGCCCACGACCGGAAGCCCCTCGCCCGGCGCACCGACCCCCGCCCACCACCTCCTTGTGGAATGCACCGACTGCGGACGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCGTGGACAGAGAGAACTCGCCCCACCCCGCCGACATCGCCGACGTCAAAGCACACATGAGCAACCTCCGCGACCTGCTCAAGCCCGTCTAAGTGCGGCACGCGTCACGGCTCTGGCATACAGAAGCCATGAGCGAGCTGCACCCACCGAAACGAACGCCCCTCGGTACGGGACGATCACGCCCCTTGCTTTCACAACGCCGCCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTTTAGAGCGACGAGCAGAACCGCTCACAACCCAGGGGGCGATATGTCCTTTTCTCTGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : GACTTCCAGTCGTTGGCGGTCGCCGCTTTCCGCAGGGTGTTACGGGACAGCCCTCAATCGGGGCGTTGAGCGCGCACGAGCAGTGTGCCCAGGCCTACTGCGTCCGGGGCGGGCAGGACGTGAGCTTCGATGCCGATGAAGCCGTGGCGCTTCAGGAGGTCTGCCCATGCTTCGGGCGGGTACTGCCAGCGCAGCACGGTTAGTTCGCGTTCCCGTCCTTCGAGCCATTTGCCGCGCATCGGCTGCGGGCCGTACGCACCGAGGGTGGGCTCGGCCTGGCTGAAAGCGAAGACTCCGCCGGGTGCGAGGCTCTTTGCGAGGAGAGGGAAGAGGATCTCCGGGTCGGTGAACCACACCGCACCCCAAACGAAGTAGATCGCGTCGTAGGGTGCCGTGTTGGAAGCGAGGTGGTCGCACACGTCCGCGTGGAGGAACGACAGGCCCGGAACGTCCTTCCACCATCTGCGGGCGCGTTCGACCTGGGCGGCGGAAAAGTCCAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 678-829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMS010000023.1 Streptomyces anulatus strain SID7903 contig-7000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 678 29 100.0 32 ............................. CAGTGGTCACAGGCGGGATGCAGTTCACCGAA 739 29 100.0 32 ............................. GGCTGGGTCCCCGGACCCATTCCGGGAGCAGG 800 29 82.8 0 .....................GG.G.GG. | C [817] ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : CGCCCCGGCTGCCCACGACCGGAAACCCCCCGCCCGCCGCACCGACCCCCGCCCACCACCTCCTTGTGGAATGCACCGACTGCGGCCGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCATGGACAGAGAGAGCTCGCCCCACCCCGCCGAGATCGCCGACGTCAAGGCACACATGAGCAACCTCCGGGGCCTGCTCAAGCCCGTCTAAGTGCGGCACGCGTCACGGCTCCGGCATACAGAAGCCATGAGCGAGCTGCACCCACCGAAACGAACACCCCGCAGTACGGGACGATCACGACCCTTGCCTTCAGAACGCCGCCTCTGGCCGCCCGCAAAGGGCAGAATGAATCCCGACGTTCAGAGCTACGAGCAGAACCGCTCACAACCCAGGGGCAATATGTCCTTTTCTCTGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : CCCCCTCCGGTCGTCCGGAGTCGCCGGCATCTACAACATCTCCACCCTGGCCGCCCACCGCCGGCGCGGCTACGGCGGTGCCATCACGCTCGCGGCCCTCCGCACGGCCCGCGAGTGAGACCACCGCATCGCGGTCCTGCAGGCATCGGGTGACGGCGAGCCCGTCTACCGCCGCCTGGGGTTCCGCTCTTGCGGCCAGTTCACCGAACATGCCGTCAACCCCTGAACCGCTAAGGCTCCACTGACCGTCCGTCCGCCATTCCTGAATGGGCCGGTCACAGCCACTCATTGATGGCCGCTACGAGGACAGTGGCCCTTCCCAGCCTGTGATCGCGGGGCTCGGTGAACACACCGTCCGACGGTTCCTTCCGCAGGTCACCCCGTTTGCGGGCCCCGGGCCTCGGTCCTAGTTACCTCGTTGTGTGTACGCCCCTTGCGGCCGATCATGGGTGTCGGACCAGCAAGGAGGAACAGGATGGGGCTCATGCTCTCCCCCGGCG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19355-20784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMS010000105.1 Streptomyces anulatus strain SID7903 contig-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19355 29 93.1 32 .....................G..G.... TGCGCGGCGAACCCGCGCAGCTCCCGGCCGGC 19416 29 93.1 32 .....................G..G.... GGCCTCCCACTCCCGCAGGACGCGGTCGCGGT 19477 29 93.1 32 .....................G..G.... GCGCACGCGGCGAGGTAGGCGATGGGGGCGAC 19538 29 100.0 32 ............................. TGGCGGCGATCCGCAGGGAGCTGGGGAACCTG 19599 29 96.6 32 ............................T CTCGGCGGACCACTCCGGGTGGTCCGTGCGCT 19660 29 100.0 32 ............................. ACAGTCTCGGGACGCACCTACCGCCGGACCCG 19721 29 100.0 32 ............................. CGTGCGGAAGCTCCCCGGTGGGTGAAACGGCC 19782 29 100.0 32 ............................. CTGGCGTGGAAAGACCGCCCCTTGAGGACGGT 19843 29 100.0 32 ............................. CCGGTGCGCCGGAGGGCCGAGGGCCGGAGGGT 19904 29 100.0 32 ............................. GTCGACAACGGCGGCTCGCTCAAGTCGCCGAT 19965 29 100.0 32 ............................. TTCTCCACGGACTTGTGGTTGCCAGCCTTGTA 20026 29 100.0 32 ............................. CCGAGTGCGTTCCGATAAGCGCGGTCCCTGAC 20087 29 100.0 32 ............................. TCGCCCTGAGACGCCATGGTGGCGTCCGAGAT 20148 29 100.0 32 ............................. ACCTCGCGGCCCGTCCGGTGACGGCGGGCGAG 20209 29 100.0 32 ............................. GACGTCGCCAGGGCAGTCCTTGGTACAGCGGA 20270 29 100.0 32 ............................. GTGGCGCGACCTGCGGGCCCGGTGCCCATGGA 20331 29 100.0 32 ............................. GAGTCGGATCAGTGGTCGTCGTCGGATCTGGT 20392 29 100.0 32 ............................. CCGTCCTGCGCCGCATCCTCTGTCGGCTCCTT 20453 29 100.0 32 ............................. TCGTCCCCGTGCACGCCCCGGTTGGCCCGGCG 20514 29 100.0 32 ............................. TTCGGAGACATCGAAGTTTCCTTTGCCGGGAG 20575 29 93.1 32 ..............C..A........... AGCTTCCAGGTCCCGGACGCGTCCAGGACCAT 20636 29 93.1 32 ....AT....................... TGACCGTTGTTGTCCTCGTCGAGCTCGATGTC 20697 29 96.6 32 ...........A................. GTCCAGTACGGGCTGGCCGAGCTCCGGCGCGA 20758 27 89.7 0 ....................--...A... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.8 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : TGCCCACCGCCGGAAGCCCCTCGCCCGACGCACCGACCCCCGCCCACCACCTCCTTGTGGAATGCACCGACTGCGGCCGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCATGGACAGAGAGAACTCGCCCCACCCCACCGACATCGCCCACGTCAAAGCACACATGAGCAACCTCCGGGGCCTGCTCAAACCCGTCTGAGTGCGACAGTGCGGCACACGTCACGGCTCCGGCATACAGAAGCCATGAGCGAGCTGCACCCACCGAAACGAACACCCCTCGGTACGGGACGATCACGACCCTTGCCTTCAGAACGCCACCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTCTAGAGCTACGAGCAGAACCGCTCACAACCCAGGGCGCGATATGCCCTTTTCTCCGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAAAACCGCAGGTCACGAACT # Right flank : CCTGATCCGAAGGATTGCCGGTTTGGTAAACCGGCGTGGCCCCTGCGCCAGCGGGGCACCCCGGAGTCAAGTAGCGCTGCATAGAGCACAGTTGAAGCTCGCGCGAAATGGCACCCGCACTACTACAGCTCCCGCCACGCCCCACACTCCGCGAGTCGACCGGCGGAGCCCGGCAACCAGGCCCACCGTCGGCTCCAGGTTGCACACCAAGCCCCGGCGCACGTCAGCAGATCACTCTCCCCTCGGTCACTCTCGGTCAAATAGGCGCACTTGCGTTCACCTTCGACCATTGCAACCGCCGTATGGCTTCGACGATGTCCAATACGCCCATGAGCCGCGATGATCCGGAAAGCCTGTCGGCTTACGCCCACCTGTCCCCCACCTCCCGCACCGCCTGGGGCAAGCACGACCGGCAGACCGAACAGTGGCTCCCCCTCTGGCGGCACATGGCGGACAGCGCCGCCGTGGCAGGTCGGCTCTGGGACGAGTGGCTGCCCGAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30839-31293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMS010000105.1 Streptomyces anulatus strain SID7903 contig-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30839 29 100.0 32 ............................. GCCCCCAAGAAGCGCCCGCCGAACAACAGGTC 30900 29 100.0 32 ............................. TGCCCCTCCCCCTGCGGCGGTTGGTGCCCTCC 30961 29 100.0 32 ............................. GAGCGGCGTATCCGGCGGGCTCGCCGACGGGT 31022 29 100.0 32 ............................. TGGCGGGCGTCGGGGGCGATCTCCGGGCCACG 31083 29 100.0 32 ............................. AGGAGAATCGCCCGTGCGCACATACTCACGGG 31144 29 100.0 32 ............................. CATCTGACTTGGCTCCGTGACTTACTTTGAAG 31205 29 100.0 32 ............................. TACGAGATGCTTCTGCCGCTGGGCCTGCTCCT 31266 28 86.2 0 .....................G..-A..G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : TGGTGACCGTCATCGTCCTCACCAACTGCCCGGTCGGCCTCAGGGGCTTCCTCACCCGCTGGCTGCTGGAAATCTCCCCGGGCGTCTTCCTAGGCTCTCCGTCCACCCGCATGCGCGACCTCCTGTGGGCCGAAGTCCGCGAGTACGCCGGCCAGGGCCGCGCCCTGCTCGCCTACCAGACGGACAACGAGCAGGGCTACACCTTCAAAACCCACGACCACTCCTGGCACCCGACCGACCACGAGGGCCTCACCCTGATCCACCGCCCGAGCATCCACGCCCGGCGGGCGGGCAGTCCGGAGAGCGCGGTGACCGACGTTCCCCAACAGGGCTGGAGCAAGGCGTCGAAACGACGGAGGTTCGGGGGCAGAAGGTAGGTGCGGCTTCGAGAGCTGGGTCAGGTCGGCGTGCACCACTGGACAGGAGAGCCCTTTATGTCCGATTTCAAAGAAGTGGGTAAAAACAGGCTCCTGCCCGCGTAGAACACCAGGTCAATGACT # Right flank : GTCAGCTCGCAGAGCCCTCGAACGGGTGACAGACGTGGTTCCCGCAGGCCCGCTGGTTGCGCGCCACCACGGCGGGATGCGTCACAGACCTGTCTCGGACCTTGACGGAAGCAGGATGTAATGACCAGTGCGCCGGACTACAGCCAAGGCATCGACACCGAGCGCGCCCTTAAGTTCGCTGTGCAGCGCATTCGCGGGGACCGTGTCCAGATCGTTGAGGGGATCATCGAACCGGTGTCACCGACGTGGGACCACGAGCGCGCTGCCAAGCTCGTACGCCGCCAGATCGAGAGGCGAGTCGACGAGCTCGGGTGCGTGGAAGGGTCCGGGAATCTGGACCTGCCCGGGTCCTCGAACTGGTATGTCCCGGACATCGCCGTTGTGCCGGAGGATCTGGCCAAAGGAGGCAGCGCCCTGCTTCCCGACCAGACGCTGCTGATCGTAGAAGTGACATCCGAGTCGAACGCGGAGACGGACCGGGTCGTCAAGCGACGTAGGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //