Array 1 3006101-3004437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016561.1 Salmonella enterica subsp. enterica serovar Heidelberg strain A3ES40 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3006100 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3006039 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3005978 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3005917 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3005850 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3005789 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3005728 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3005667 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3005606 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3005545 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3005484 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3005423 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3005362 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3005301 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3005240 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3005179 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3005118 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3005057 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3004996 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3004893 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3004832 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3004771 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3004710 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3004649 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3004588 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3004527 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3004466 29 96.6 0 A............................ | A [3004439] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3023485-3022359 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016561.1 Salmonella enterica subsp. enterica serovar Heidelberg strain A3ES40 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3023484 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3023423 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3023362 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3023301 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3023240 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3023179 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3023118 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3023057 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3022996 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3022935 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3022874 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3022813 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3022752 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3022691 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3022630 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3022569 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3022508 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3022447 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3022386 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //