Array 1 3472-3304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJWE020000203.1 Bathymodiolus brooksi thiotrophic gill symbiont isolate B brooksi SOXB, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3471 36 100.0 30 .................................... TTCGGACTGAGATAAGAAAAAAAGGCACTA 3405 36 100.0 30 .................................... GATATGGGGACGCATAAGAAGATAGAAGGG 3339 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Left flank : TCTTGTAAAAAAAAGACATAAAAGCCAATACTATGTATTCTCAAACAGAGACTAAAAGCAAAAAAACACAGGGTTCTTAAACATCAGAAAAGTTTAGATTTTGATATACCGCCCTAATTATTAAGGTTTAACCTTGATAAGGTTTCAGTTGCTGGCTGTTTAGATTATGATGTGCCGGTTGACCTCTTAAAAAAATCGTTCTGGAGTGCGAATTTCACGAATACATTCTTACAACTCATCAAAATAAGACATAGAATCCCCTGCCTTAAACCGCTCATCATCCAACACAAAACCTTTGCTAATATATTCTTTGAATTGTTTGGTCGCCCAAATTCTGAACTGCGTGCCTTGCGGGGGCTTTACTCGATAACCCATAATCATTTCTAAATGTAAATGATCAACTTGGTAGGTTTTATCGTCTGTCGCAGTTGTCGCAAAAATTGCGACAACTGACTTTTTACTTAACTCACCTTCTTTAAAAATATTACCAAATTCTTTAA # Right flank : CTTTTCTAGCAAAATTATACCCAATTAAAATCAAATTGCAAATCACAACAACTGAACAAATATATAGAAATTATATTATAATAATTTTTCAGTTGAAAATTTGGGTGCATATTATTTTGCTTATTGCGTTTTTGTATGTAATAGGTTTGTTGATAAAACAGGATAAGAAAAATGAGTAAAAAAATATTAGGATTAGATTTAGGATCAAACTCAATTGGCTGGGCTTTGATGAATGAGACAGATGGCGAGGTTGAACAGATTATAGATTTAGGTTCGCGTATTTTTAACAAGGCAGTGGAAGGGAAAATGCTCACACCTAAAAACCAAAAACGCCGAGATATGAGATTAGGGCGACGAGTTTTACAACGCCGAGCAAGGCGTAAGCAAAGAATGGCTAATTATTTAATTTCACTTGATTTATTGCCTCAAGAATTAAGTAATAATTTTGGGCAAGAAAAATTACTTAATGAGTTGGGTGACCCTTATGAGCTCCGTACCAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 275-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJWE020000210.1 Bathymodiolus brooksi thiotrophic gill symbiont isolate B brooksi SOXB, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 274 28 100.0 32 ............................ GTTATGAAATTTCTTCAGACGGCGACATATTG 214 28 100.0 32 ............................ TTGTAAAAAGCAAGAGCAAGAGCAATTATGCA 154 28 100.0 32 ............................ GAAAATCACGCTTAACAAGACCAAAATGATGA 94 28 100.0 32 ............................ TTCATCCTCTTCGGGCTTATAGATCTATTTAT 34 28 96.4 0 ...T........................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 TTTCTAAGCCACCTATGTGGTGGTAAAT # Left flank : CGATATAAATAGTTTTCGAACTGTTGTCGTCATTATCACCACAAGCAGATAACAATAACACCCCAAGTATAATAAGACATCGACCCCTTTTGAATTGCGACGGTAAAGTTATCATTGGTATTGAATCTCCTTTGTTTTTAATAAAACACTTGCAAGTTGCTATTACTAATGTAATAGACGGTAATTATATCGTCAATCAATAGCCACACTTGCCAAATAACAAGACTTTTATACAAATGGATAATTAGCAAAATTCAATTTCTGCCCAATTAGCGACTTCTTTAAATCTTATGAAACCCCAACAATTTCAGACAACAATTTAATTTTTCTCATTTTAAACCCATTAAACCAAACTAAACAAAAAATTAAAGTAAAAAAATGAGTAAAAAACAAACCAAATGAACACCTGCATTCAAAACCAAACTCACACTTGAGCCATTGCAAAACGAACAAACCTTAGTACAGATTGCTAGCAAACATAACCTTCAGGATTTTTAAAT # Right flank : TATAAAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTAAGCCACCTATGTGGTGGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 4-302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJWE020000405.1 Bathymodiolus brooksi thiotrophic gill symbiont isolate B brooksi SOXB, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 29 .................................... TTCGTATCTTGATGATAGAGGTCCGACTG 69 36 100.0 30 .................................... ATTGACTTTTAGCCTCTGCCCAAGCGGCCT 135 36 100.0 30 .................................... TTTTAGCTCTGTGTCTGTGAATCTTTGAGT 201 36 100.0 30 .................................... AGAACCAATGACGGCAAAGCCGTGGCCCCA 267 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Left flank : TCAG # Right flank : TCTCCTTATCTAAAATGCTTTAATACCAGTCTTTTATCGTTTTTTCTAGTCAAAAAAACGATAATTGATCTGGTGCTTTTTCGACAGGTCGGCGTTTTTTTCCATAAAAAACTTCAATTCGCCCAAACTGTTTATCTGTTATTTTGATAATGCGCACTTCGCCGTCTGCTGGTAAATGCATTTTTACTCGGTTAGCGTGAACTTGTGCATTTTCTTCGCTACTAGAGTGGCGCATATACACTGAGTATTGCATCATGGTAAAACCATCTTCAAGCAACATCTTGCGAAAAAAACGATAGTCCCGTTTAGCTCTTTCATCCTCAGTAGGTAAGTCAAACATGACAATTATCCACATGGCATAAAGTCCGCCAAACACTACAAATGCGGATAAACTATTTTTTTATTTTCCTTGACAAAATTTCGCTTTAAGTCTGCCATTAAATAATGCAACGATACCATTAGTGGCATTTTTTTATTTTTAAATTCAACGCTTTTGCTAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //