Array 1 107535-106059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZX01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST111849 ST111849_0004_0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107534 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107473 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107412 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107351 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107290 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107229 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107168 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107107 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107046 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106985 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106924 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106863 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106802 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106741 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106680 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106619 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106557 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106454 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106393 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106332 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106271 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106210 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106149 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106088 29 96.6 0 A............................ | A [106061] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125587-123667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZX01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST111849 ST111849_0004_0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125586 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125525 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125464 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125403 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125342 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125281 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125220 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125159 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125098 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125037 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124976 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124915 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124854 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124793 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124732 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124671 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124610 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124549 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124488 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124427 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124366 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124305 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124244 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124183 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124121 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124060 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123999 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123938 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123877 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123816 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123755 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123694 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //