Array 1 948013-949505 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023292.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4233 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948013 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948074 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948135 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948196 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948257 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948318 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948379 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948440 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948501 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948562 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948623 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948684 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948745 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948806 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948867 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 948928 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 948990 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949051 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949112 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949173 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949234 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949295 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949356 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949417 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949478 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965637-967601 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023292.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4233 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965637 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965698 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965759 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965820 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965881 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 965942 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966003 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966065 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966126 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 966187 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966248 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966309 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966370 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966431 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966492 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966553 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966614 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966675 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966736 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966797 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966858 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966920 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967023 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967084 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967145 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967206 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967267 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967328 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967389 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967450 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967511 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967572 29 96.6 0 A............................ | A [967598] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //