Array 1 3037225-3038895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060817.1 Xanthomonas oryzae pv. oryzae strain C9-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3037225 31 100.0 35 ............................... ATCTGCTCAAGGCGTCCAGCGGCCAGCTGCTCGTC 3037291 31 100.0 35 ............................... CGGCTATCTTTTCCAGTGCCTCAAGCATCCTTGCA 3037357 31 100.0 34 ............................... AAGTACACACCAGGTACGCCAGATGAGTTGTCAG 3037422 31 100.0 37 ............................... AGCTGACCACAGGTAAGATTGTTGATCTGATCACAGT 3037490 31 100.0 34 ............................... TGTCTGGTCCATCTGAAACGGGTTGAAGCCGGTC 3037555 31 100.0 35 ............................... TTGGTCTTCCGGTATTCCTCGTGCAGCCAGCGTGG 3037621 31 100.0 35 ............................... CCAAAGAGCCGCCCAAGCTGTATCGCCAGACGCAC 3037687 31 100.0 35 ............................... TTGTCCAACACCTTGCCGTCGATCGCACGCAGATC 3037753 31 100.0 34 ............................... AATCAGCGCGCTGTCGGTACGGCCCGAGCCAATC 3037818 31 100.0 33 ............................... CCCCGTTGGGTGTATGCAAACAAGATCAAGCTC 3037882 31 100.0 35 ............................... AAGACTTTTTGGTACAGGTGCAGGGCGGCCAAAAC 3037948 31 100.0 35 ............................... CACTGGCGACTCAAGCACTTGCAGGAGAGCATGCG 3038014 31 100.0 34 ............................... GTTTACTTCTGCGATTTTCGCGGTAGGAAGTATG 3038079 31 100.0 35 ............................... CTCAAGATTGCAGATTATCCAGCAGAGGTGCGCCA 3038145 31 100.0 35 ............................... AAGGGGTCTGCGACGCAGCAGCTCCAAACGCTGTC 3038211 31 100.0 35 ............................... AGAGAGACGAGGCGGAGGCTCGGGCACGTGTGGAT 3038277 31 100.0 35 ............................... TGTTCTTTACGGTATTTGTAAATTAACTCCTGCAC 3038343 31 100.0 34 ............................... AAGGCACAGCAGGAACGCGCGCGCAAGACCGACC 3038408 31 100.0 34 ............................... AAATCGATTGCGACCCGTCTAGCATCGTGCCATG 3038473 31 100.0 33 ............................... CTCAAGCAACACCCACTGTGCTGCTACTGTGAA 3038537 31 100.0 35 ............................... TGGTCTGCTGCTTCTGCCTTAATGGCAGACAGCCT 3038603 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 3038668 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 3038734 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 3038800 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 3038865 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 26 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CGTTGAAAACTAGGGTCTGTTAACACATCCGAAGCCCATCAACGACCAGAACGAAGCTGAGGAAGCCAAGGAACATGACATCCAGCTTCTCGAAGCGCGTGAAAATCCGTCGGTAGCCCTTCAAGCGACGGAACAGCCTCTCCACTTCGTTGCGCCGCTTGTACATTTCCTTGTCGTACTCCCAAGGATCGACCCGATTGGACTTGGGTGGAACCACCGGCACGAAGCCAAGATCGAGCGCCAACTTGCGGGTTTCATTGTCTTCGTAAGCGCGATCCATCAGCAGATGAACCGGCCGCTCCACTGGCCCCAGGTGTTCAAGCAACGCGCGGCCTGCGGGTGCGTCATGTGCGTTGCCAGGCGTCAATCCGAACGTGATGGCTGTTCGAGCATCTGCGGCAACCATATGAATTTTGGTGTTCCATCCGCCCCGCGATTTCCCGATGGATTGTGGGCCGTTTTTTTTAATGCGCCAGTGCCATCCGGATGCACCTTGATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3039746-3043525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060817.1 Xanthomonas oryzae pv. oryzae strain C9-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3039746 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 3039811 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 3039875 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 3039941 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 3040006 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 3040073 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 3040138 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 3040206 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 3040272 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 3040338 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 3040402 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 3040467 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 3040534 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 3040600 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 3040666 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 3040734 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 3040799 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 3040865 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 3040931 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 3040996 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 3041062 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 3041128 31 96.8 34 .......T....................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 3041193 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 3041259 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 3041325 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 3041392 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 3041457 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 3041523 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 3041589 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 3041653 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 3041719 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 3041784 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 3041850 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 3041915 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 3041982 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 3042047 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 3042114 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 3042181 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 3042247 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 3042314 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 3042382 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 3042447 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 3042512 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 3042577 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 3042642 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 3042708 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 3042774 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 3042839 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 3042904 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 3042970 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 3043036 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 3043100 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 3043167 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 3043232 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 3043298 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 3043363 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 3043430 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 3043495 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 58 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGTTGCCAGGCGTCAATCCGAACGTGATGGCTGTTCGAGCATCTGCGGCAACCATATGAATTTTGGTGTTCCATCCGCCCCGCGATTTCCCGATGGATTGTGGGCCGTTTTTTTTAATGCGCCAGTGCCATCCGGATGCACCTTGATGCTGGTGGAGTCCAGCGAGACCGCTTCGATTTTGATGCGCACGATCTGGCAGGTCTGCAATTGGGCGAACATCCGGTCCAGCACACCGGACTTGGCCCAACGGTTAATGCGCGTGTACACCGTATGCCAGTTGCCAAAGCGCTCGGGCAGACCGCGCCATTTGCAGCCATGCTCTGCGACGTAAAGAAGGGCGTTGACTACCTGCAGGTTGGTCATGCTGACATTGCCGCGTTGCAAAGGTAGGCAATGCTCGATGAGTGCAAATTGTGCTGGCGTGATCTCCATGCCCAATAGTTTAATCGCTCGAGACATTAATGTTAACAGGCCCTAGCATGTCACCAAATCCCGAGCGT # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //