Array 1 108881-106831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQYK01000023.1 Salmonella enterica subsp. enterica serovar Putten strain CRJJGF_00159 SQ0207Contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 108880 29 96.6 32 ....................A........ GATCGGCGCTGATGCCGGCGTGTGTTGTTGAA 108819 29 96.6 32 ....................A........ AAGGCTCTGTCATTCCACCTTTGAGTGTTAGA 108758 29 96.6 32 ....................A........ CAGGTTATGCGCAAAAATTAATTCATATTATA 108697 29 96.6 32 ....................A........ CCCCAGCGCACTGTCATCTGACCGCGCCATCA 108636 29 96.6 32 ....................A........ GTTTACAGCCTGAGCAATGCTGGAATGAATGA 108575 29 96.6 32 ....................A........ GTAGACGAGGCCGCTAAAGTGGCGATAGACCG 108514 29 96.6 32 ....................A........ CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 108453 29 96.6 32 ....................A........ TGTTTGTGCCGTCAGAAAATCGCCACTTATGA 108392 29 100.0 32 ............................. CGGCGAAAAATCCACTTCTGAGGCTTAACGAA 108331 29 96.6 32 ............................A GCACCTGAGCGTCAGGCAATTGATCGGTAAGC 108270 29 100.0 32 ............................. TCATCTGTCAGGCGGTATTCCAGTTCGGCAGG 108209 29 100.0 32 ............................. CACTTATAACTGTCATTACAGATCCCTCACGT 108148 29 100.0 32 ............................. GCCATAAATCACCATACCGGGGAGTTACCCCG 108087 29 100.0 32 ............................. CCCCGGCGGGTGCCAGGGCTTGGGAGGTTAGC 108026 29 100.0 32 ............................. CATTTCTCCGCATGGATATCTATAACCATTGG 107965 29 96.6 32 ............................T GGCTGGATTGATTCAAGAAAACTGGTATGCGC 107904 29 100.0 32 ............................. GGAAAAAATATTTTGCCAAAATGTTCACTTAC 107843 29 100.0 32 ............................. GTCTGACCAGTGGTGCGGGGGGATTGCAATTT 107782 29 100.0 32 ............................. GGGGAGGCTGAACTGCGCAGCGTTCTGTATAA 107721 29 100.0 32 ............................. ATGAGCGTACTGTCATCTTTGCCGACAAAGAC 107660 29 100.0 39 ............................. CAAACCACCACCACGGCCACCGGCGACCAGTCCGCGCCA 107592 29 100.0 32 ............................. GCATGTGCACATTATTTCAGGGCGAAATCTCG 107531 29 100.0 32 ............................. CGAGAAAATAACCACAGTAGAGCAGGGAGCAG 107470 29 100.0 32 ............................. CCAGAGATCAGGTTGGAAAGAGGTTATTTGCC 107409 29 100.0 32 ............................. GTCTAGCCAACGGTTCTTTGTCCATTGGTGGG 107348 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 107287 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 107226 29 100.0 32 ............................. GCCATTGCTGGAGATATTTAAATTATGACCAC 107165 29 100.0 32 ............................. TCAGCGTCACGCTCGGACAGCACGCTGCATCC 107104 29 100.0 32 ............................. TACCGCGGACTTATTCCCCATTGCTGGGTGTT 107043 29 100.0 32 ............................. GCTGGAGTGTTACTCCCTGACTCATAATTTGA 106982 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 106921 29 100.0 32 ............................. AAAGAGCGCGGAATGATTTTTAACGGTGAGAT 106860 29 96.6 0 ........T.................... | A [106833] ========== ====== ====== ====== ============================= ======================================= ================== 34 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATATTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAATCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGAATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127411-125552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQYK01000023.1 Salmonella enterica subsp. enterica serovar Putten strain CRJJGF_00159 SQ0207Contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127410 29 100.0 32 ............................. CCATTATTGCTCGCGAAATTAACGATGCCACC 127349 29 100.0 32 ............................. GCTGGCTGCAACTTTATCGTCTTTCATTTTAG 127288 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 127227 29 100.0 32 ............................. TTCATGAGGCGTCACGTACCATCCACCGAACT 127166 29 100.0 32 ............................. TTCGCGCCATCCCTGCGGGCGGCTTCTGGCGC 127105 29 100.0 32 ............................. CCGCACCAACCGGAACGTGGTATGTGGCTTTG 127044 29 100.0 32 ............................. CCTTTATCTTGAGCCTTGCTCAGTGATTTTGT 126983 29 100.0 32 ............................. GAAACATATAAAAATGAGCGTTTCATGCATTA 126922 29 96.6 32 ............................C AGAATGACAAAACAAAAAATGTTGGTTCTCAC 126861 29 100.0 33 ............................. GCGTGGAATATAGCGAACTAACAATGTATGAGC 126799 29 96.6 32 ............T................ ACTCACCAACTGATCCAGTAAATTGCTCTTAC 126738 29 100.0 32 ............................. CATATATAATCAGTGTTAAAATCACCCGAAAA 126677 29 100.0 32 ............................. GCAGTTCGGAGACCAGGAATATACCGCCGCAC 126616 29 100.0 32 ............................. AATTTAACCTCCAGATACCAGAATATCTGGGC 126555 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 126494 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 126433 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 126372 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 126311 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 126250 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 126189 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 126128 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 126067 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 126006 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 125945 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 125884 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 125823 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 125762 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 125701 29 96.6 32 ...........................T. GCGTGTAGTGGTGGGTATATACTCGCCGCGGC 125640 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 125579 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGACAAAAAGTAGTTTATAAACAATGATATACGATTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //