Array 1 3276-3854 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETN01000073.1 Escherichia coli strain KCJK8722 NODE_73_length_19820_cov_3.507490, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3276 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 3337 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 3398 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 3459 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 3520 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 3581 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 3643 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 3704 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 3765 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 3826 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7901-9027 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETN01000186.1 Escherichia coli strain KCJK8722 NODE_186_length_9079_cov_3.616175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7901 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 7962 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 8023 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 8084 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 8145 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 8206 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 8267 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 8328 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 8389 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 8450 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 8511 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 8572 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 8633 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 8694 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 8755 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 8816 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 8877 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 8938 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 8999 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //