Array 1 422150-423642 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQU01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 35423 SEET5423_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422150 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422211 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422272 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422333 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 422394 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 422455 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422516 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422577 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422638 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422699 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422760 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 422821 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 422882 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 422943 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423004 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423065 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423127 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423188 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423249 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423310 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423371 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423432 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423493 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423554 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423615 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439774-441677 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQU01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 35423 SEET5423_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 439774 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 439835 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 439896 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 439957 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440018 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440079 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440140 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440202 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440263 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 440324 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 440385 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440446 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440507 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 440568 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 440629 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440690 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440751 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440812 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 440873 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 440934 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 440996 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441099 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441160 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441221 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441282 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441343 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441404 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441465 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441526 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441587 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441648 29 96.6 0 A............................ | A [441674] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //