Array 1 111-739 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHZ01000002.1 Pseudomonas aeruginosa strain Pae_CF67.10a CF67.10a_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 171 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 231 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 291 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 352 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 412 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 472 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 532 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 592 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 652 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 712 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38972-40616 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHZ01000024.1 Pseudomonas aeruginosa strain Pae_CF67.10a CF67.10a_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38972 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 39032 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 39092 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 39152 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 39212 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 39272 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 39332 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 39392 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 39452 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 39512 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 39572 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 39632 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 39693 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 39753 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 39813 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 39873 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39933 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39993 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 40053 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 40113 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 40169 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 40229 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 40289 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 40349 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 40409 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 40469 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 40529 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 40589 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 50840-49491 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHZ01000024.1 Pseudomonas aeruginosa strain Pae_CF67.10a CF67.10a_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50839 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 50779 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 50719 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 50659 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 50599 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 50539 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 50479 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 50419 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 50359 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 50299 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 50239 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 50179 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 50119 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 50059 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 49999 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 49939 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 49879 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 49819 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 49759 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 49699 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 49639 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 49579 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 49518 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //