Array 1 225380-223951 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089701.1 Klebsiella pneumoniae strain UCI82 aeusl-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225379 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 225318 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 225257 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 225196 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 225135 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 225074 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 225013 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 224952 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 224891 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 224830 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 224769 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 224708 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 224647 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 224586 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 224525 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 224464 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 224403 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 224342 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 224281 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 224220 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 224159 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 224098 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 224037 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 223979 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCCAGCGGGGATAAACCGCCGCTTTAACCCGCTCCGGCAGATCCGGGTGA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229286-228587 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089701.1 Klebsiella pneumoniae strain UCI82 aeusl-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229285 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 229226 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 229165 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 229104 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 229043 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 228982 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 228921 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 228860 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 228799 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 228738 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 228677 29 100.0 33 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGGCGTAA 228615 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGCATGTTCCCCGCGCCAGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //