Array 1 8264-9070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMW010000258.1 Serratia marcescens strain A14 Contig_258_38.7382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8264 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 8324 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 8384 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 8444 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 8504 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 8564 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 8624 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 8684 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 8744 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 8805 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 8864 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 8924 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 8984 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 9044 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1434-143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMW010000263.1 Serratia marcescens strain A14 Contig_263_57.7336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1433 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 1373 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 1313 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 1253 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 1193 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 1133 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 1073 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 1013 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 953 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 893 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 833 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 773 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 713 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 653 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 593 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 533 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 473 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 413 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 353 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 293 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 233 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 173 28 96.4 0 ....................A....... | G,A,A [146,150,152] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //