Array 1 133852-135223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVEB010000006.1 Citrobacter farmeri strain CB00189 CB00189_c0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 133852 29 100.0 32 ............................. CATGTCCTGGCGTTCTTTGCTGTCCCAGTTGT 133913 29 100.0 32 ............................. CGTTCAGGAACTTGTTTTGCAGATTAGTCGCC 133974 29 100.0 32 ............................. CTCGCGTGCCGTGTGCCACGCCGGATCGCTGC 134035 29 100.0 32 ............................. TAGGTACAATTCGAGAGTCGCTTGAAATGACG 134096 29 100.0 32 ............................. CCAGCAGCAATTAGATTTCTCAGCCAGGCGGC 134157 29 100.0 32 ............................. ATTAAACACCCAGCTATCCCTTGCTGCTCTGG 134218 29 100.0 32 ............................. CCGGACGCGGCTGATAACTCCTAAAACTACTT 134279 29 100.0 32 ............................. GCTCCTTTTTTATTGCTGGCATTCACCATCAA 134340 28 96.6 32 ........-.................... AACAGTGTTAGGAGTGTTGAGGGTAGCGCCAA 134400 29 100.0 32 ............................. GTCATTCATTGTCAGCGCTTCAGCGTGAGCGC 134461 29 100.0 32 ............................. TGACGGTCGAGATAGTTAATCGTCGACGCAGC 134522 29 100.0 32 ............................. AAAAAACAGGCTGACGCAGACGCGGCGCTGCA 134583 29 100.0 32 ............................. ATTACACATCCCGCCTAGTGGATCAGAAATGG 134644 29 100.0 32 ............................. AGATCGCCGCCGCCACCAAATACCTCATTTCA 134705 29 100.0 32 ............................. AGATCGCCGCCGCCACCAAATACCTCATTTCA 134766 29 100.0 32 ............................. ATGGCGGCCATCAATCTACATGCCGCGCTGGG 134827 29 100.0 32 ............................. CGTAGCAGACATGATCCGCGATTTGAGTATCG 134888 29 100.0 32 ............................. GGATATGACGTGGCAACAGTACGCAGTAGCGT 134949 29 100.0 32 ............................. CGAATTTATACGGAATCGGAATTCGAGCGCCG 135010 29 100.0 32 ............................. ATTGAACCTGATTGCAACCACGACGGCCAGGC 135071 29 96.6 32 ............T................ GGTTTAATTGTCAAGATGAATGTTTGTGACGG 135132 29 89.7 32 .........A...TT.............. ATCTGTGTTGTCCCTGGCACCTGGTTATTGTC 135193 29 75.9 0 .........A.T.GCA..........A.A | AA [135214] ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGCCAGATAGAGACCAGCGGTACGCACGAAGTGCGCTGCACACCCAATACCTGGGTGACCGTTTCTCCGAAGGTGAACATGCGTGGTGGTTATGACGTTCTGTCACAGGCGCTGGAACGCGCAAATGAGATCAAACATCCGGTTGGGCGCGTACGTGATATTGAAGCGCTGGACGAACTGCTTGCCACGCTGAGCGACGACAAACCGCGGGTGATTGCGCTGCAACCTATCAGTCAGAAAGAAGATGCCACACGCCTGTGCATCGAAACCTGCATTGCGCGCAACTGGCGCCTGTCGATGCAAACACACAAGTATCTGAATATTGCCTGACATGATTAACTTTCAGTCGCGATTTAATCGGTAGAATGCGATAGAGGTTACAGTTCCTTTTTCTCTATTCCTTAAAATCAATGAGTTACTGCTCATTGTCAATCTGGATAGAATCGGTAGAAATTGAGAGTGTTTAAAAATATCCCATATTCAATGGGTTGTATTTAGA # Right flank : AACCAAAACCGTCATCCATTCAGGTGGATGACGGTTTTATGCTATTAAGCGCCTGTTTCAGGTTCAGACTGGAGATGGAAACGCTGCATAAGCTGGCTGCCTTTCCAGCCATACCATCCTACATAAGCGAAACAGACCACGGGGATCGCATAGGCGAGTTCGACGGACATTTCGCGGGCGACCAGCCCCATCAGCAGAGGGATTGCGGACGCGCCAATAACGGCCATAATCTGCAGTGACGTCCCGCGTTTCGTTTTTTCACCGAGATCTTTCAGGCCCAGCGCCATTGTGGTTGGCGACATAATCGACATAAAGATAAAGGTGGCAATCAGCGCGATAATCGAGACGTAAGGAATACCGATGACAACCAGAGCGGAAAGCACCACGTTGATTAAGCCGTAAATACCCAGCAGGCGATGAGGCGAAATCCAGCGCATCAGCACCGTGCTGATGAAGCGACCTGCCATGAAGCCTGCCAGCGCGATGGATAAAAACACCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 159489-160676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVEB010000006.1 Citrobacter farmeri strain CB00189 CB00189_c0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159489 29 100.0 32 ............................. CCCCTCCCTTTTTTAGTTGATCATTTCCTTTC 159550 29 100.0 32 ............................. CCCCGCCTTAAACTGGTTGCTCTGGCCTTTTG 159611 29 100.0 32 ............................. AATTTTGCCAACAACACCATCGTTTACGTGGC 159672 29 100.0 32 ............................. TCGATTAGCGCCAGCGGACACCAGTCCCCTTC 159733 29 100.0 32 ............................. AATTTCGCGGAGTTCCCTGTGCTGGAAAAAAT 159794 29 100.0 32 ............................. CCTGTTATCTCTCCACAACTTGATCCTCGTGT 159855 29 100.0 32 ............................. TTTCTGGCGCCGCCGTTCTCCGTTCTGAATGC 159916 29 100.0 32 ............................. TAATTTACTGCGTGACCTGAAATCCAACCTGC 159977 29 100.0 32 ............................. GTACTGATCAACTTCCGGCCCACGGTTAGACC 160038 29 100.0 32 ............................. GTTCTCTGTCAGTAGTGATCGACGATGAAAAC 160099 29 100.0 32 ............................. CGGCATTACTACAGCATAGCGCCGAAATTTTT 160160 29 100.0 32 ............................. GAAAACCGACTCAACCAAGTTTTACGCTCCCC 160221 29 100.0 32 ............................. CAACGCGTTTCACGTTCAGCTCCATTGCCGAT 160282 29 100.0 32 ............................. CACCCGTACATGTTTGGTGCTGGATATAACAG 160343 29 96.6 32 .C........................... TCACCGCCCATCACGCGCTTCACGGCGGCGGG 160404 29 96.6 32 .C........................... CTCATTCCTGATTGATGATTCAGAGTTGGACG 160465 29 96.6 32 .............T............... CGGTTATCCCGCAGCATCGACAGCGACCGGGC 160526 29 100.0 31 ............................. TGCTCGAGTGGATTCAGGATTGTGCCGATTA 160586 29 96.6 32 ............T................ ATCGGGGAAGTGAGAGGTGGGACGTGGCTTTT C [160588] 160648 29 75.9 0 A.......T..CT...T.........T.A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTTGCCGCGGGGGAAATCCAGCCACCAGCACCGCCGAAAGACGCACAGCCTGTCGCTATCCCGCTCCCTGTATCTCTCGGTGATGCGGGACACAGGAGCAGTTAACAATGAGCATGCTGGTTGTTGTCACTGAGAGTGTTCCTCCACGTTTGCGCGGAAGGCTGGCCGTCTGGTTGCTGGAGATTCGGGCAGGTGTCTATGTGGGGGAGGTTTCGACGAGGATACGCGAAATGATATGGGAACAAATTTCGGGCCTGGCGGAAGATGGCAATGTCGTGATGGCATGGGCGACCAACACGGAATCAGGATTTGAGTTTCAGACTTACGGCGAAAACAGACGCGTTCCGGTAGATTTGGATGGGCTACGGTTGGTTTCTTTTTTCCCCATTGAAAATCAATAAATTGCTTGTTCTTTAATAATACGGAATTGTTTACAACAAGTTGGTAGATTGTTGATGTTGAAGAATGTTTTTGATTTTTAAGTGTATTTTTTTAGA # Right flank : AAAATCGTGATGGTGTTCCTCATTGCATCAGATAAAAATCTGAAAATATTATCCCGTGCTGTTTTATTAATTTCTTTGTTTTACCCTTGGTGACGTTATTGCCGGAGGCAGTGACGTCACTATAAAACTGAGGGATTAAATAGATGAAAAAGACTTTTTTGGCTGCGGTACTGACTCTGGTATCTGGTTCTTCTTTTGCTGCAATTACTGATACTTGCCAGCAATACTTTGATGATGTTGATGCGTTGATTGTTCAGGCATCCAAAACCAGCGATCAGGCTAAACAGCAGATGGAAGCCATGAAACCTCAACTTGAGGAGGCCAAGAAACAACTCGCAGGATTACCGGCTGAAAGTCAGGATGCTGGCTGCAAACAAGGTGCTGCCGCGCTGGTGCAAATGAAGCAGTCCATGGGCATTCAATAATTTATTATAAGAAAACGCGTCATTGAATAAACGACGCTCAGAATAGTGTCACCCTTCGCGTCTTTTGCCAGAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //