Array 1 1105567-1107548 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061719.1 Raoultella ornithinolytica strain LL1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1105567 29 100.0 33 ............................. GATGAGTTTGTCGGCGTGAAGTCCTCTACGCGC 1105629 29 100.0 32 ............................. AAATACACCGTTATACTGACAGCTGCGGGAGT 1105690 29 100.0 32 ............................. GGGTTGCAGTTTATCTCCCGTACCATCACGCC 1105751 29 100.0 32 ............................. GCCGCCAATAGCTTTACTGGCGGCACTGACCG 1105812 29 100.0 32 ............................. CTCGCAAACCTGATGAAAAGCGAGTTTATGCG 1105873 29 100.0 32 ............................. TGGGTGAAACAATATCATCAGCAGAATATCAG 1105934 29 100.0 32 ............................. CTTTTGCGCTTTATGAGGATTTCAGTCAGGTA 1105995 29 100.0 32 ............................. GGCGATTCTCTTAGAATAACAGTGTCTTTCAC 1106056 29 100.0 32 ............................. GCGAGGTGGCGGCATGAGCGAACTAACAGCAG 1106117 29 100.0 32 ............................. GTTTTTCCAAAGCCAGTATCCGCCATGATGAA 1106178 29 100.0 32 ............................. CATCCCTACATGTTCGGAGCTGGCTATAACAG 1106239 29 100.0 32 ............................. TCGATATACCAGACGAATTAATTGATTAACAG 1106300 29 100.0 32 ............................. CTATTCCGGATGGAGCGCCGGGATATCACACC 1106361 29 100.0 32 ............................. GTTAAACCAGGCACCGCAGCCGGGTGCTTTGC 1106422 29 100.0 32 ............................. AGATTTTGATGCGTGGATGTATGGATGAAACC 1106483 29 100.0 32 ............................. ATGCAAGACTTTCAAGCCCGTCAATGTCTTTA 1106544 29 100.0 32 ............................. CCATCGGTATGAGTTTGCAAAAAGATGGTCAA 1106605 29 100.0 32 ............................. ATGATGATAGCGCGGGCTTTAATCTTTTCCGC 1106666 29 100.0 32 ............................. TGAAGGAAAACGGTGAAGTCAGGTCTTCCAGG 1106727 29 96.6 32 ............................A TATTCTGACGCCGATCGCTTCCGTGCGCCGCA 1106788 29 100.0 32 ............................. AATCCCAAACCGTGCGTATCGAGTCAGTAACA 1106849 29 100.0 32 ............................. GCGTTTTTGTTGTAGGGTTAGTTACAAACATC 1106910 29 100.0 32 ............................. AGATAGGCGCGGGTCTGCGCGACGTGATTGGG 1106971 29 100.0 32 ............................. GACGGCCGCTGGTCTGATGCTGCCAGTATCGG 1107032 29 100.0 32 ............................. GTCTCAATATTCAGCCGCTCACCAGAGGGCGC 1107093 29 100.0 32 ............................. AGCGCTAGATAGCGAGGTATTGGCGCTGGACC 1107154 29 96.6 32 ...........G................. CAGGCGAAGATCACCGCCGAGACCCTGAAAAT 1107215 29 96.6 32 ...........G................. AGGCTATTGTGCGCTCACTAAATACCTCTTCT 1107276 29 96.6 32 ...........G................. TCGACGATATTCTGGGTGATGGTGATATATGA 1107337 29 96.6 32 ...........G................. CGCGTGGCGGTACCGATGACGATTCAAATCTG 1107398 29 96.6 32 ...........G................. CCAGGCAACAGCGGCCACGGCGTAGTTTTCGC 1107459 29 93.1 32 ...........G.T............... TACGAGGACTGTCGTAAAACCCCGTATTACCG 1107520 29 82.8 0 ...........G.T........A...TA. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.7 32 GTGTTCCCCGCATCAGCGGGGATAAACCG # Left flank : CTCATTGAGGATGTTCTGGCGGCAGGGGAAATTCAACCGCCAGATCCCCCTGAAGATTCGCAACCTGTTGCGATCCCACTTCCTGTCTCTTTGGGAGACTCTGGCCATCGGAGTAGCTGAAGATGAGTATGCTGGTCGTCGTGACTGAAAATGTACCACCACGACTGCGAGGAAGGCTGGCAGTCTGGTTGCTGGAGGTTCGTGCGGGGGTTTATGTTGGTGATGTTTCAGCAAAAATTCGCGAGATGATATGGCTACAAGTTACTACTTTGGCACAAGAAGGGAATGTCGTAATGGTCTGGGCGATGAATACTGAATCAGGATTTGAATTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTGGATGGCTTGAGGTTGGTGTCATTTTTACCCATTAAAATTCAATAAGTTAGTGTTCTTTAAAAATACGGAAATTTTGGTGGAATTTAGTATGTTGAAAAAAGCCTTTTAGTTCAGATAGATATAATTAGA # Right flank : GACCGGCTCTATTAGCTGTGCTTCTCTGCCTTCGCCAGCTCTTTTATCAGCGGCAGCATCACCTTGACGACATCGCGGCTGCGGCGTTCGATACGGCCCGGCAGAGCTTTATCAATATACTGCTGGTTATCGAACTGCACGTCATGCCAGCGGGTTCCTTGCGGGAAGGCGGCGGATTTGTTGCGCTGCTGATGGCCATCTTTCTTACCCGGCGACCAGTTCGTAGCCTCCACGGACAGGACCGGGATCCCCGCGCTATCAAAAATGCTGGCGTCATTACAGCAGCCGGTCCCCTGCGGAGAATCATGATTGAGGCCTGGATGGGTATAGGCGGCGATCCCTTTGCTGCGCGCAATGGCCAGCGCGCGGTCTCGGGTGAGTTTGCGAATCGAGGCGGGAGTGCTGCGCCCGCTATTAAAATAGAGCTTATCGCCAACCACCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCCGCATCGTTCATTCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2402997-2404948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061719.1 Raoultella ornithinolytica strain LL1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2402997 28 100.0 32 ............................ ATGCTCGGCGTCTGGTAATCGTTATTGGCGAT 2403057 28 100.0 33 ............................ AAAGACGCACTCATGAAATGCAATGCGCTCGCC 2403118 28 100.0 32 ............................ CAAAGGCTCCGTCTTATTCATCTGGCGACCGT 2403178 28 100.0 32 ............................ ATTGGCATCTTTGCTTTTAGCGATGTGTTCGA 2403238 28 100.0 34 ............................ CATCGCCAACATCACGCCTTCATCACGGTCTGAT 2403300 28 100.0 32 ............................ AGCACATCAGTCCGTAGTCTTCACAGGTCTCG 2403360 28 100.0 32 ............................ TGGAATGGCAATGTTGACCGCGCACACACAAT 2403420 28 100.0 32 ............................ ACAGGAATTCACCACGAAAACTGCAGACTTAT 2403480 28 100.0 32 ............................ AACAGGGATGTTGCTCGAAACTTTCCCGTCGC 2403540 28 100.0 32 ............................ TCTGCCATCTCTCTGGCTACGGCGCTGATTGC 2403600 28 100.0 32 ............................ TCTAACCGGGGCGGGATACCTGCGCCCTCCAG 2403660 28 100.0 32 ............................ TGGCAATTAACGGCTCACCGCGCCCATCAAGA 2403720 28 100.0 32 ............................ AGAGTTGCGCCGGGTGAAGGTGCCAGGCTGCC 2403780 28 100.0 32 ............................ TCCCCGCGAGAACGGTAAATACCTCACTACTG 2403840 28 100.0 32 ............................ ATGCATAGTGCGCCCATTTGTACGTCGCATTT 2403900 28 100.0 32 ............................ ACAATAACATTGAATTTTGCCATACAGCGCTA 2403960 28 100.0 32 ............................ TACTTCGTTGACAAGACGCCAGACGAGTCAGA 2404020 28 100.0 32 ............................ AGAGTGGCAATGACCGGGGTTCTGTCGTGCCT 2404080 28 100.0 32 ............................ CTATCCAATTGTTCACGCAAATGGAGGTTATG 2404140 28 100.0 32 ............................ GCCCTGCTTCAGGCGATCCGCCCAGCGACTCG 2404200 28 100.0 32 ............................ TCGTTCCGGCATCAGCTCGCTTACCGGAATCC 2404260 28 100.0 32 ............................ TTCACAGGATGGTCGCCGAAATGTTTGTGAGT 2404320 28 100.0 32 ............................ ATCAACCGAGGGGATTTTTTATGTCGAAGTGG 2404380 28 100.0 33 ............................ CGCGCAGTAAGCGCCAATAAAAACGAGGTAACA 2404441 28 100.0 32 ............................ AGTACCGCTGTAGCACCATGTCCTGCGTGATT 2404501 28 100.0 32 ............................ CAAACAGCCGTGAACTCCTTGGCCCCCTTAAT 2404561 28 100.0 32 ............................ ATTATAAGTAATGCCACCCATCGGATAAGAGA 2404621 28 100.0 32 ............................ TTACCGAAGTGCGTGAGCGCCTGACCGCTGCC 2404681 28 100.0 32 ............................ TTGTAGAGTCGGCTGGCCAGGCTCCGTATCTC 2404741 28 100.0 32 ............................ ATCTGTCCGTCTTTGCTGTCAGGGTCGATATA 2404801 28 100.0 32 ............................ CTACGGTAAACCTCCGGGCAGCGGGCTTCCAT 2404861 28 100.0 32 ............................ TCTACCAGCGCGATGACATTGGCAGGGTTGGC 2404921 28 85.7 0 .....................C.G.G.C | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTGCCAGCGCCGCTCTAGCTGTGATCCGGCCATGCAACGGGCGCGCTTAACGGTCGGCGGACTGGGCAAACTCCCGCGCCAGCGCCGGAAACGCGGCCAGCCCGGCGGAGGGGGGGCGTCTGCCGGGTGTCCCTGGTGATTCCAGCGCCCGCCGTGCTGGTTGGCTCCGCTTCCTGTCCAGGTTTCGCTGGCGTAACGGCCGGTCACCAGACGATAGAAAATCATGCAAAAGTTCCCGTCTTTCAGGCAGCTAACACGTCTCAATAACGACATTTGTCATGTTTCATTTTAGTCATTTGTCGGGTTGTTGAGGGGTTAATCGCGGGCACGGTTGCCAGGGAGGCAGGATTATGCAGTTGACTACGGAGACCTTTTTATTTGTTGTTTTTGTAAGTTATTGATTTTTATTGAGAGTAATGGCAGCCCTGAAAAAAGGGTGAGATGAGTAAGTTTGAGGTTTTTTATATATAAAACAAAGAAGTGAGTTGATATTATTTCA # Right flank : CGCATTAACTCGCTGATTATCAGAATAAATTGCGCCATTCATTTCTGGACGACAAACTGGAAAATCAGCATGGCCGAAAATAGTGATTCGAGAGGACCGACCGCTGGACGGTCCGCCATTTTCGCTTTATCAGCCCGCCATTCAGCTTTTACTGCTGCAACACCTCAGCAAATTTCGTCAGCCATTGCGGATGCGCGGGCCACGCAGGAGCGGTGACGAGGTTGCCGTCGACATGCGCCTGATCGATACCTATTTCAGCATAATGCCCGCCGCTGAGCCGCACTTCCGGCGCACAGGCCGGGTAAGCGCTACAGGTCCGGCCTTTCAGTATTCCTGCGGCGGCCAGCAGCTGCGGGCCATGGCAGACGGCGGCAATGGGTTTGTGCGCGGCGTCGAAGGCCTGTACCAGTTTGAGCACCTCATCGTTCAGGCGCAGATATTCCGGCGCTCGTCCACCGGGGATCAGTAGGGCGTCATAGTCCTGTTCTTTTACTGCCGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2415817-2416806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061719.1 Raoultella ornithinolytica strain LL1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2415817 28 100.0 32 ............................ TCGAACCAGGCACCGCAAATGCGTTTGTTCTC 2415877 28 100.0 32 ............................ ACCTGCAGTCGACAGCGATTCCACCAGGCAAC 2415937 28 100.0 32 ............................ CTTCAGGGCTGGCATCTTCGGTGGTTTTCACG 2415997 28 100.0 32 ............................ GTGGAGAAGAAACCGCCATATGGCGTTGGCGT 2416057 28 100.0 32 ............................ GCGCTGGAAAAGATAAAAGAGTGTATGGCGGA 2416117 28 96.4 32 ........T................... CTTTAGTTGAGAGACTCTCAAGCTTAATGACT 2416177 28 100.0 32 ............................ ACTGGCGTTATCACCATAGTCGACACCAACGG 2416237 28 100.0 32 ............................ GTCAGTCAGACATCCGCCAGGCGTTCGTGGAC 2416297 28 100.0 32 ............................ AGCGTGGGCATTCCGGTTCGTACGGTCAGCGC 2416357 28 100.0 33 ............................ TGGAACCGTCACCTACTATCAGCAGCGCCTGAT 2416418 28 100.0 32 ............................ ACTATGGAGGTAGCGCCACAAGACGCCATAGG 2416478 28 100.0 32 ............................ GGCCTGCGCACGTTCTATGACGCGGTAAACGA 2416538 28 100.0 32 ............................ TGGCGCGGTCACTACCGCCGACGAACGCCAGC 2416598 28 100.0 32 ............................ CTCAAAGGCCGCCTGTGCGCGCAGGCGTAATG 2416658 28 100.0 33 ............................ TTTAAAATTCGTCGGCGATAAGTGGTAATGAAA 2416719 28 100.0 32 ............................ GTAACGGTCACGTTCGACGGTGACGTATTGCT 2416779 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGTGCTACCCGCTCACTTTCATCGGGAGTGAGGGTTCGCCCCGCACTTTTGCGACGAGCAACGTTGCGCTCATTAATGCCCGTTACGCGAAGAATGTCCGCTTTAGACATCTCGGTCCATTCATGAATATTATCGAGTACGCTGACCGGTAGCCCCTGATTGAGAAATTCGATCAGCCGCATTCCCCGATTTGCAGGCAAACCGGCATAGCGCCAGAGCGCGTTGTCAGCAGGCTTCTGCTCGGGAACCCATGTTCTCATTTTTCATCTCCTGCTTTCTGTCATTTGTCATGGTTAAGTATAGTCATTTGTCTGGTGTTTGACAGGGCGATTTTTTGACGAGTCGTACATCCCTGGCAGATGCCGGAGACCCTTTTTTAATGTTTATTTCTAATTATTTGATTTTAAAGGTTATTTTTCACAGGCTGAAAAAGGGGGAGAAGCGTCATTATATGAGGTTATCTCGTGAAATCAGTAAATTATGGAGATATTATGTCA # Right flank : ATGACATGTCCTGAACAATTTCAAAGACCTGATGTAGGGGGCAAAAACCACGGGCGTCAAAAAAACCGGCAACCCTTATCAGGACACAATCTCACTGCTGTTTTTAAATCGTGTCGGGACTTACTGAGATAAGGTGATTTGAACAGTTCAGCATCTGAAAGAGTATCGAATAACGATTCGCTCATCGTCGGTTCTGAATGAACTTAAATGCCGTGGAACAGGCTGGAATTCTATGGGGTTTACCAGAAAGAGAACGTATGAAAACCTCACGCCGTTCGATAACCGACAGACTGTTGCTGAAGTCTGCGGAATAAAGAATGGTGCGTCCGAGTGGACTCGAACCACCGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCATTATGGTGCGTTTAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATAAACGCATTATGGTGCGTTCAATTGGACTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //