Array 1 58283-58841 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDHX01000023.1 Paenibacillus alvei strain G25-117 G25-117_contig000023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58283 30 100.0 35 .............................. GGGAATAGTGATATCGCTGATCCTTGTGAATCTCC 58348 30 100.0 36 .............................. AGTGTGAAGAATGGTGGGTTAGCTATTCTGGACAAC 58414 30 96.7 37 ..............C............... TATGCGCCAGTAGGACCGGCAACCGAGAAACGTTCAG 58481 30 100.0 36 .............................. TACTCCTGGATTGCTTCGGTTACCCGGATCACGAGT 58547 30 96.7 37 ....................T......... TGGTTTGTGGGGACGCATCAAGATAAATCCGAATGAC 58614 30 100.0 36 .............................. AAGTCGCGGTAACGCGTTGGCATTGCTTCAGGTGTA 58680 30 100.0 37 .............................. ACAATTGCGGGGCCGAGTTCGATCTTTTTACATCACT 58747 30 96.7 36 ........A..................... ATCGTGGAATGGATATGGGGATGTAAGGGAAAGTTG 58813 29 86.7 0 ...................A...-CA.... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.4 36 GTTGAACAGTAACATTAGATGTATTGAAAT # Left flank : TGTCCGCCATCATGGCTGCAATGGCAAGCGGGCAAGTGATGAACGGAGCTGTAGATGCTGCCCATGCTGGACAGCTTGAAATGAATCTTCTCGTTTACCGTACCGCCCTGATCGGTGCGGCTGTATTTTTGCTCCTTGGCTTATGTGCCGCCTTCCGAATCCAGGACAGCGACGCCGCCGCGACCATGAAATCTCGGCAATCTTCTATTCCTGCGACGAAGCCTGTAAAGGCTGAAGGATAGAGGATAAAAGATCACGTATCTATGCCCAAATATTAGAATTTAATGCTTCAATATTCTATCTTTATTACAGAGATAGTCTGTTTTTCCCAACCGTCGTGGATAAGTGATAGAGGCAATATCCAAGTACAGTAAAGGTTTAGAACAATTTTGACGAGTTTTCAGAAAATTCCGTTTTAGGTTGGGAAAATTATAGTGAAACCCGCGTGGTTGTAGTAAAATTGCTATATTAGTGTTTTGAAAAAGCCTGATTTATCTAGG # Right flank : TTAATAAAAGCGCCACCTATACTGTAGCGCATTCTCCTTTTGAAGGATATTAGTTTTAAAGTTTTATATAAAGACAAAATGATTCTTCCTAACAGTTGTAAATAGTGGTACTATAGTTATAGGAAAATCACACCATGTGTTACTGTTGATTTTAGAACATAATTTAAAGTCAAAAATTTCAATGCATCGCACGCTACAATAATGAATATTTAATTTGCTTTCATTCTATTGCTCTACTATATCGTTTCATTACTAGAGTCTGCAATAGGTAATAATATTCAATCTACTTAGGAGAGGGGAACGATATGTACTTTGAATTAAAGGCGACGGTCATGCTGAAGCAGTCGGGACATTATTTGGAATGGCCTGAGCGTATAAGTGCTTGGATAGGAAGGGCCAGCTTGCATGATCCCATGTTGAAACATTCACATTACGAAACCGCATACAAGCATTATGTGTATGGAGCACCTTATCCGAGAGAGAATGATGGAATCTACAAG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 68355-71021 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDHX01000023.1 Paenibacillus alvei strain G25-117 G25-117_contig000023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 68355 30 100.0 35 .............................. ATAGATCCACTCAGGACATTAATAAGTGGATCTTG 68420 30 100.0 36 .............................. TGACTGAGCGATACCTTTACGACATGTATTCGTTCG 68486 30 100.0 36 .............................. AGTGCGAATCGCTAGAATTTTTCTGCGAGGAGGTTA 68552 30 100.0 36 .............................. AATGCAATCCCTAAGAAATTCGCGCTTTTGGGCCAA 68618 30 100.0 36 .............................. TCCAAATGTAAAAGTGCTGCTGATCAGCTCGCTAGA 68684 30 100.0 36 .............................. CTTGTAAGTGGTTTACCATGGAGCAATCCTCCCGGA 68750 30 100.0 35 .............................. AAGCGGCACGGGCTATTTTCGCGCAGGATAACGCC 68815 30 100.0 36 .............................. TGGTAAGGCAATGCACCTTTTATGGGCAGATTACTA 68881 30 100.0 36 .............................. ATCTCTGGAACCTCGATTTCGAATCTGAAACATACC 68947 30 100.0 36 .............................. AATACCACAAAAGTTACCGGTAGTTTTTCTATAAGT 69013 30 100.0 35 .............................. TATCATCCGCCTGCAGAAGCAAATGAAGTTGAGCG 69078 30 100.0 36 .............................. AGCGTTCGAGGATGCAAGTGATTTCGATATGAACAA 69144 30 100.0 37 .............................. CATGCAGTTGTGTTGAGTCAGCCCAAGAGGTGCAAAC 69211 30 100.0 36 .............................. AATATATTGGCCGTAATTCCTTCATGAACTGTGTTA 69277 30 100.0 37 .............................. GCGTAAGGAGCGGGAAAGATTCGAAAAATTACTCGCT 69344 30 100.0 36 .............................. TAAATTCTCGCTCCAGACATGCTGTCACCTTGTGCT 69410 30 100.0 36 .............................. TAGGGGGCGGGACATTTGGCATTCATGAAAAAGAAA 69476 30 100.0 37 .............................. CGAGGTTATCCCCCAACAGTACGCGAGATTGGCAAGG 69543 30 100.0 36 .............................. AGGAGACGGAAAACGACTTGCCGAAACATTGGATCA 69609 30 100.0 36 .............................. AAGCCTACAACACTGGTCTGGAAACCGACGCATTGC 69675 30 100.0 36 .............................. TGGCTGCACTCACGGGCATGGTTGATGAAGGATTAT 69741 30 100.0 36 .............................. TGTATCGCAGCGTCAACTCGAAGATATTTTGGTTCG 69807 30 100.0 39 .............................. GAGTTGGAAGCAGAGCAAGATACCAGCTCATTTACGAAC 69876 30 100.0 37 .............................. AGCGAAGGGCTATCCTGCGAGGAACCGCGTTAAGGAG 69943 30 100.0 36 .............................. TAATGAAAACTACCGTAAAATTGATACAGCTATTTC 70009 30 100.0 35 .............................. GCTATCGCCTGTTCAAACGTTTGGAACGTATGGGT 70074 30 100.0 36 .............................. AATTTGAAGGTGCAGGAGCAAGCGGTATCGATGTTT 70140 30 100.0 36 .............................. GGCAATGACAACACTGAAATTGTAGACGCACGAGGA 70206 30 100.0 35 .............................. TTAGGATTTTAAGGATGTAAGATAGTAACATAGAC 70271 30 100.0 35 .............................. CATATGAGCTGCTAGAGAAAGGACTAAGGTAATGT 70336 30 100.0 37 .............................. TACTCAGCATCTGCGGTACTAACGAGAGAGTCTCGAC 70403 30 100.0 36 .............................. AAAGAACTCGACAAATTCGCCAATGGGGTAAGGGAT 70469 30 100.0 36 .............................. ATTCAGTTCGACAGCCTTTTCCCTTGAAGTAGCAAC 70535 30 100.0 37 .............................. CGCCGATACGTGATCCGAAATTACTCGAAGCCAACTC 70602 30 100.0 36 .............................. ATGCAGCTCTCCGCGATGTACTGGTCAGCTTCCGTT 70668 30 96.7 35 .....................G........ CATTGTGGCAATGCTACGGGCTACACCGAGGGAGC 70733 30 100.0 34 .............................. GCCAGCGAGTTCACAAGGGAGAAGTCCAGTTTTG 70797 30 100.0 35 .............................. ATCGCTACCCAGATAATCAGAATCGGCATGACAAA 70862 30 100.0 35 .............................. AGACGAACTCTCACCTGTTCCTGTACACCACGTTG 70927 30 100.0 35 .............................. TACTATAACGAGAAAAACGAAGCTGTTATTAAGAG 70992 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 99.9 36 GTTTGACAGTAACATGAGATGTATTGAAAT # Left flank : CGTTTATGCCTTTTCTTCTTAAAGAACGGAGATGAGCGAGGATGGGGAAGAACTATAACTATGTCATTTTAGTTTATGATATCGGAGAAAAGCGTGTAGGACGCGTATTTAAAATATGCAAAAAATATCTGGTACATTTTCAGAAATCAGTGTTTCGTGGAGCGATCACACCTGCAAATTTATTGAAATTGCGAGGTGAATTGAAGAAGGAAATTGATAAAGAATCTGATTTTGTAGCGATATTCAAAATGACTGGTGACTACGTGTTTGATGAAGAGATTATTGGGGTTAGATTGAACAATTCTGAGTCTTTACTACTCTAATTTTCCCAACCTCTTTCGTTTATACAATTGAAATAGCCTTAGTGCTGCAAGGGATTAGGGCGGTTCCTGACACGTTGTAGCATTATTCACTCACGGTTGGGAAATAAATAGCGAAAGCCGCGTGGCTGTAGTAAAATTGACTTATTCAAAGACTAGAAAAGCCTGATTTTACTAGGG # Right flank : TACTTTTAAACCGCAGGTGAAGGCCTAATGTACGAAGTTTTGACTAAACGAAGGAAGAAAGGTAGAAGTACGAGGTAGAATAAAATACGGCAACCCAAAAGGTCGAGTAGAGCTTGTTAGGGCCTCCATACTCGACCTTTTAGATTTAACTTACATATGGATCACCCAAAATTGCAGCGGACAGTCCTTACTCTGAACCGTTATTCTTCTCGGATTTAGATACTTCAATAGCAGCAGCATCGACCGCTTGTTGGCCTTTTTCATCGATTAGAATTAACGCTTCATCAATGGTTAGTTTGTTGGCAATGACGTCCTCCACGATTTGGTTTCCGACACTTTTGAATGCGTTGATGATATCATAATGAACAGATTCATAAGGATTGTGATTGAATGGGGAAGCTTTAAGCATCGTCAATGGGGATAAGTCATGTCCCTTCACGGAAGGGATAAGTTCGGTTCGCGCCGGAAGTCCGTGATTGATTTCCGTGGAAGTCATAGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 163173-164010 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDHX01000078.1 Paenibacillus alvei strain G25-117 G25-117_contig000078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 163173 32 96.9 33 ...........T.................... CTTCTCACGCTGCAGATCATGAAGCCGTCATTA 163238 32 100.0 35 ................................ TGGTGTTAGTCCTTGTGGTTGAGTTCGCTGAACTG 163305 32 100.0 35 ................................ CGTCACTATGTCACACCCTTTTTATTGCATCATAA 163372 32 100.0 35 ................................ GGTATGTGCCCCCGCCTTGCTGGTGACTAAAAGAA 163439 32 100.0 35 ................................ ACTGAAGATGGGGACAAGCACAATCCGGATAAATC 163506 32 100.0 36 ................................ TTCATATCCTCCACGGCTGCTGGTGCGATTTTTGCA 163574 32 100.0 33 ................................ CTCTATAGAAATGGGGAAAGTGCTGCTGGCATC 163639 32 100.0 38 ................................ TGTTCCTAGCGAGGAAGGCCAGCACCCGGAGGAAGGTA 163709 32 100.0 42 ................................ GTTAAATCTAAGATGTAAAGCCGCTGATTCGGCACGTCTACA 163783 32 96.9 34 ..........C..................... GTTAATGCGCCGCAACCGGATGCGCCCCAAGTAA 163849 32 100.0 33 ................................ TTATCTGACGGACTGTACTCGGAAAACGGCAAT 163914 32 100.0 33 ................................ TCGGACATTCCGGGGCGAATATATCGTACGGTC 163979 32 96.9 0 ............G................... | ========== ====== ====== ====== ================================ ========================================== ================== 13 32 99.3 35 GTCGCATCCTACACGGATGCGTGGATTGAAAT # Left flank : ACAAGAAGATTGGCGATGCCGTTAAGGCAGGCGAGTCCCTGGTAACGATCCATGCGAACCGTGAGAACGTGGATGACGTCATCGCAAAAATTTACGAAAACATTCGGATTAGCGATCATGCTGAGGCACCGGTGCTTGTCCATGATATCGTAACGGAATAAATAGGAAAAGAAGAGCCGTGTATGACGAAGGGAGTATTTTGACCTGAGTCATGCACGGTTTTTGTATTTTGTAGTTGTTTTATAAATATAGTATTTACCTAAATTAAAAGAATGGTATATATTGGGGTGTAGGTGTGGTCATAAAGCTGGAATAATTCTGGTACGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCTGTTATTATGCATTTTTATCCTTTTTTTTCTCTATAACATTGCATCTATCTTGGTTTTTGACCGAAAATTTCGTTATAATGAGTGAACAAATCATTAACGGAAGTGAATTTATAAATATAGGCTCACTTTCCGCT # Right flank : TGCGCCAGATAAGTAGTAACTACCTGCATTTATTCCGTCGCAACCTACGTAGATCGTAATTTCTGGTCGTGAAGGTTGTACGGAGTGGTGGAGAGTCATATCCGATATGAGAGCATGAATCGAATACCTAATAACCTGCACAGGACATCAATGGAACTAATGCTAGTTCGAGAGGTGTCCTTTTTCTTGTTCACATATGTCGTTTACTATATACAAATAATATGGTAAATTGTAGATAATTGTGGGGTTCTGTAGAAATAGGTCAAAAGTATTGCCTTTGTTGTCTTTGTTCATATCTTGAAAATCATGACACACAAAGGAGCGTTGATATGTTTTCGATTGCTCATATTCGTGAAAGCGACCAACAGGTACAGACGGTCGAGGCGCATTTGTTAGAGGTGAGAACATTAGCGGAAGGTTACGGTAGTAAGCTGGGTGTCCCTCATGTGACCGGACTAGCAGGTATGCTCCATGACATGGGAAAATATTCACAAGAGTTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 172491-174887 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDHX01000078.1 Paenibacillus alvei strain G25-117 G25-117_contig000078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 172491 32 100.0 34 ................................ ACCACTTCCACGAATTGAGTATCTGTTGATTCGT 172557 32 100.0 33 ................................ CGTTGTTGAAAATCAGGAATAGCCACCATAAGA 172622 32 100.0 37 ................................ TCTATTGCATATCTGCTCCCGATGGGAACATCGAGTG 172691 32 100.0 39 ................................ ACCACCTGTTCGGCGTTAAAATTGCCGTAAGATGATACA 172762 32 100.0 33 ................................ TTTGATAATAGACAGCCATCCCGTAGCTGCTTC 172827 32 100.0 39 ................................ CATCAGGGAGGTAACCACCTTCAATGGTTAGCCTGTACG 172898 32 100.0 36 ................................ TATCAAGGTATCTGTGAACAGGAGGATAAGGTCGTC 172966 32 100.0 37 ................................ AGAATAGGCAATGCTTGTCGTGCAATGAGTTGGGCTG 173035 32 100.0 35 ................................ CTGGTGGATCCTTTTGTCTTAGGACTTTTAATAAC 173102 32 100.0 36 ................................ AACGTCGAGGTAAAGGACTTGTCATCTCAAATACAG 173170 32 100.0 35 ................................ TCCACTCGCCTCTGGATTGATGGATTCGAAAGATT 173237 32 100.0 36 ................................ TATTGCATACAATGGCGGCATACCTCCTGGAACAAA 173305 32 100.0 35 ................................ GCAATCTACAACAAAACGCCAACGCCAGCACGGGT 173372 32 100.0 35 ................................ ATCAAAGGGCCAATGTTGGACGGACTTCGAAAGCA 173439 32 100.0 33 ................................ AGATATGATCATAAGCCGGTTTGGATTACAAGA 173504 32 100.0 36 ................................ TGACTTGGCAGCTGACGACTACACCGCAGAAGCGAT 173572 32 100.0 36 ................................ CGTTGATACAGCTGATATGCAATTCTGAGCTGGTTC 173640 32 100.0 34 ................................ AGTCCGCTGTATGGATTTTATGTCCGGGGTTTAT 173706 32 100.0 35 ................................ AGATCATTGACGATGTACCAGACGGATGAAGATCA 173773 32 100.0 35 ................................ AGTCCAAGAATGGTTTCGATAGAGTCAGAAGGAAG 173840 32 100.0 39 ................................ TGAAATCATTGTTTGATCATTTCAAAACTAGGAACGAGC 173911 32 100.0 36 ................................ ATCGGGAACCAGATATAAATAAAATCGCCATGAAAG 173979 32 100.0 38 ................................ ACCATGACGGATGGGGATTTAAGTACATCTGGTACATT 174049 32 100.0 35 ................................ TTTTCTAGTGAATCCTAGATTCAAAAACTCCGTTA 174116 32 100.0 35 ................................ AGCTCGGGAATGCTAAGGGGAATCGGATAGACCTT 174183 32 100.0 38 ................................ CGACCGCGGCCTTGTATGCAATGAATAGAGACAATCCA 174253 32 100.0 35 ................................ CATCATTCATAGAAGACGGATAAGAAACACTATGA 174320 32 100.0 35 ................................ CTAATTGATATTCCAGATAGCACGGAAGGTATTAC 174387 32 100.0 36 ................................ CCCCATAGCACGAATCCTCTGGAAAAACGTGTCGCG 174455 32 100.0 35 ................................ TAAGGAACACGGGTTAAAGTTAGATGATGCTACAG 174522 32 100.0 35 ................................ TTGTCTGCTTTTCAAAGCGTCACCCCCTCATTGCC 174589 32 100.0 36 ................................ TACCGTATACGATCATATCCAAAATTACGGATACTG 174657 32 100.0 35 ................................ AAGAGCAATGTTTATCGAAAAACTAGTAGGTAAGT 174724 32 100.0 33 ................................ ACGGGTATCCTGGATGGTTTGGGTAAGGAATAT 174789 32 100.0 37 ................................ ATTGGAACGAGTCCCAGAAGGATTACGACTCACGATA 174858 30 84.4 0 ..............-.......-...G...TA | ========== ====== ====== ====== ================================ ======================================= ================== 36 32 99.6 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CCCTCCATTTTTATGGAAGTAGGTGTATGGGATTGTTGGTGTTAATTACGTATGATGTCAGCACTACGAGTAGCGACGGACAGAGACGGTTGCGCAAGGTGTCGAAGACGTGCCAGAATTATGGTCAGCGTGTACAGCATTCGGTGTTCGAATGTAATGTAGATGCCACTCAATTCGCTGCTCTCAAGATACAGCTCGCGGATATCATTGATCAGAAGGAAGACAGTCTTCGATTCTATCAGTTAGGTAACAACTATAAGAACAAGGTTGAGCATATCGGCGTGAAGGAATCGATTGATTTGGATGGGTCATTGATTTTCTAGTGCGAATGTGAAGTGCACATGATTTCTCTGGGACATTCGCACCTGATTTTTGCCATTTTTATACCAGTTCCATGATGTTGATGTAAGGTTCTCAGTTGTTTTTTATTAAAAATCGCGATTTTTGATTGAATAAATCATTATATTTAGACATTTTGATTGTTTTAGTCAATAATCGCT # Right flank : ACTAAAACGTATATTCGCTGACAAAGTTTGTAACTTGCTGCTTCTATAATAGAGGTATTCTATCGTATAGAGGTGAAAAAGTAGTATGGACTCGACAATTCTTGAGCTGCGGCTTCATCCTAATGTTATCCCCTATTAGCATATTTACTGTTTTATTTCAACACTTAAAAGGACTGGGGTAATCATTGTCCCGCTTGCCATTCATCTGTTGTGGATTCCCAATGGGCATGGGGTTAGATATGTAGTATCGGCATATCTCATTTTAAAATGGGGCAAAGCATTATTTTATATCTTGAATAGCGTTCATTTCTCTTATGAACGAAGAAGCTATGTGCTGACTGCTAATGAAATCGTAATTCATTGGGGAAACATATGGTTCACCAACTCATCGATTATCCCCACTCAGTCGAAGATGGATGACTTGCCTGACGGCAGCCTGCTGTTCGAAGCAACCTGAATCATGAGCAGAGCTTTCTGAAATGGATTTCGCAGTATGGATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //