Array 1 5125-3203 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWT01000077.1 Vibrio cholerae strain 60555434 k127_144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5124 28 100.0 33 ............................ AATTTACCATAAGAAACCCTAATACGCACTGAG 5063 28 100.0 33 ............................ TCAAGAAGCGCTTAAAATCGCCTTCATCGGCAG 5002 28 100.0 33 ............................ TCGTGGCTATCGTGCTTTTACTGGCCTTGGTTC 4941 28 100.0 33 ............................ CCCTACGCTCACCTTTGCGGATTATGATAAGTC 4880 28 100.0 33 ............................ TGTACAACAATGAATGACAACAAGAAGTAAAGC 4819 28 100.0 33 ............................ GTGTTCAAGGCGGTTATCATGACAAAGCATCAC 4758 28 100.0 33 ............................ TAAATCGTATCGCGTTACAGATATTTGGCACAG 4697 28 100.0 33 ............................ TCACTGAGCATACTTACGAGCTTTTAAAGGGTT 4636 28 100.0 33 ............................ TATAAAGAATATGAAGTAAACGCGAACATTAAC 4575 28 100.0 33 ............................ TCCTTAGCCGCTGTATGACCCAGCCCCATTTTT 4514 28 100.0 33 ............................ CAACGAATGCCCACAACACCTAACGCAATTTCC 4453 28 100.0 33 ............................ TCACCAATACGGATGCGGCTTGCTTTGCCAGTT 4392 28 100.0 33 ............................ TCAAGAAGAGATCAGGGTCGTCGCTGGGTGCGG 4331 28 100.0 33 ............................ TATTGCTGCTTTCAGGTTGGCTCCTATGCCGCT 4270 28 100.0 33 ............................ TACTGGAGTAAGACGAACGCGCCCCCGCCGCAA 4209 28 100.0 33 ............................ CCCTAGAGCAGATCCTGCTGATTAGTGATGATG 4148 28 100.0 33 ............................ TAGAAGGCGTACTTCTTCTCCTCAATCATTTCT 4087 28 100.0 33 ............................ CATTCACAACGAGGTGCGGATTGATATTGCCAA 4026 28 100.0 33 ............................ TTCGCTGATTGCCATCACTAATAGCACGCTCAA 3965 28 100.0 34 ............................ CGATCAACGATGGCCGATAGTTCACGGTCTTTAT 3903 28 100.0 34 ............................ TCCCCGCAACTTTTGCGGCTTGTTCCATAGATAG 3841 28 100.0 33 ............................ TAACCCCAAAAAAAGAAAAGCGTTCGAGTGCAT 3780 28 100.0 33 ............................ TCTAATACCGTTTGCTACGTCGAGGATGACCCT 3719 28 100.0 33 ............................ TGTCACGCTTCATGGTGCCGCCGATGCCCGCCC 3658 28 100.0 33 ............................ CAACTAAATGATTTTTTCGGAATGGAAGAGGCC 3597 28 100.0 33 ............................ TAAGCTTACCTTGGTCGATAGCCATAATGGTCG 3536 28 100.0 33 ............................ CATCATATGCATAGGTGACATATGAGCAACCAC 3475 28 100.0 33 ............................ CCCTCCAAGCCACTAGCGGCTCAAGCTCAACCG 3414 28 100.0 33 ............................ TAAGCATATTCAGCCTTTAGCTATCCATAATTC 3353 28 100.0 33 ............................ TTGTTATCAACTTGCCGGATAAAACGGACAATA 3292 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA G [3270] 3230 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.1 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //